View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633-INSERTION-4 (Length: 552)
Name: NF1633-INSERTION-4
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633-INSERTION-4 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Complemental strand, 12288835 - 12288293
Alignment:
| Q |
8 |
cttttcaagcttcgtacaagtttcactcggagcttaatttggctagactgcaattatgcatattgagcttaatttggcaagatgtctatcagtaacaatg |
107 |
Q |
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| T |
12288835 |
cttttcaagcttcgtacaagtttcactcggagcttaatttggctagactgcaattctgcatattgagcttaatttggcaagatgtctatcagtaacaatg |
12288736 |
T |
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| Q |
108 |
gcaccaacatcaccacatgtaattgttctttcaatatatttagtgcccatacaaagttatcacttatcagcgagctcatattgtaaatgggcaaacacca |
207 |
Q |
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| T |
12288735 |
gcaccaacatcaccacatgtaattgttctttcaatatatttagtgcccatacaaagttatcacttatcagcgagctcatattgtaaataggcaaacacca |
12288636 |
T |
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| Q |
208 |
ccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtcttatacattttatctcttgaaggtattcctct |
307 |
Q |
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| T |
12288635 |
ccgaaaatgtcattccaatcaaggtatc--cgacaaactcaagcaatggcaatcgattattgcaagtcttatacattttatctcttgaaggtattcctct |
12288538 |
T |
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| Q |
308 |
caattatattttccaaggcatatactttccacttctttcaaaaactacgaattagctttgtcattgttccttatttttatgtggctatttcaagcctata |
407 |
Q |
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| T |
12288537 |
caattatattttccaaggcatatactttccacttgtttcaaaaactaagaattagctttgtcattgttccttatttttatgtggctatttcaagcctata |
12288438 |
T |
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| Q |
408 |
aatcacaacaaaactattttctttccaaactattcaccatatgtatcaagcactttatcggtagtaaatacaaatgtagaatacgttaatttttcatttt |
507 |
Q |
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| T |
12288437 |
aatcacaacaaaaccatttcctttccaaactattcatcatatgtatcaagcactttatcggtggtaaatacaaatgtagaatatgttaatttttcatttt |
12288338 |
T |
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| Q |
508 |
caagttcacgttgttgttaactgcgtcaccaatctcttattcgat |
552 |
Q |
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| T |
12288337 |
caagttcacgttgttgctaactgcgtcagcaatctcttattcgat |
12288293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 83 - 277
Target Start/End: Complemental strand, 12314850 - 12314662
Alignment:
| Q |
83 |
ggcaagatgtctatcagtaacaatggcaccaacatcaccacatgtaatt-gttctttcaatatatttagtgcccatacaaagttatcacttatcagcgag |
181 |
Q |
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| T |
12314850 |
ggcaagatgtttatcggtaacaatggcaccaacatccgcacatgtactttgttctttcaacatatttagtgcccatacaaagttatcaa-------catg |
12314758 |
T |
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| Q |
182 |
ctcatattgtaaatgggcaaacaccaccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtctt |
277 |
Q |
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| T |
12314757 |
ctcatattgtaaataggcaaacaccaccgaaaatgtcattccagttgaggtaacaccgacaacctcaagaaatggcaatcgattatcgcaagtctt |
12314662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 12317593 - 12317528
Alignment:
| Q |
8 |
cttttcaagcttcgtacaagtttcactcggagcttaatttggctagactgcaattatgcatattga |
73 |
Q |
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| T |
12317593 |
cttttcaagcttcgtacaagtttcactcggagcttaatttggctagactgcaatgctgcatattga |
12317528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 83 - 280
Target Start/End: Complemental strand, 8702544 - 8702353
Alignment:
| Q |
83 |
ggcaagatgtctatcagtaacaatggcaccaacatcaccacatgtaa-ttgttctttcaatatatttagtgcccatacaaagttatcacttatcagcgag |
181 |
Q |
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| T |
8702544 |
ggcaatatctctatcagtaacaatgacaccaacatcaccacttgtaatttgttctttcaacatttttagtgcccaaacaaagttattac-------cacg |
8702452 |
T |
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| Q |
182 |
ctcatattgtaaatgggcaaacaccaccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtcttata |
280 |
Q |
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| T |
8702451 |
ctcagattgtaaataagcaaatgccaccgaaaatgttattccggtcaaagtaacaccaacaatctctagcaatggcaaatgatacttgcaagtcttata |
8702353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 83 - 280
Target Start/End: Complemental strand, 7151211 - 7151020
Alignment:
| Q |
83 |
ggcaagatgtctatcagtaacaatggcaccaacatcaccacatgtaa-ttgttctttcaatatatttagtgcccatacaaagttatcacttatcagcgag |
181 |
Q |
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|||||||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||||| |||| || |
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| T |
7151211 |
ggcaagatctctatcagtaagaatgacaccaacatcaccacatgtaatttgttctttcaacttttttagtgcccatgtaaagttatc-ctta-ca----- |
7151119 |
T |
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| Q |
182 |
ctcatattgtaaatgggcaaacaccaccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtcttata |
280 |
Q |
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| T |
7151118 |
ctcagaatgtaaataagcaaacgcaaccgaaaatgttgttccagtcgaagtaacactgacaatctcaagcaatggcaattgatacttgcaagtcttata |
7151020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 7150526 - 7150427
Alignment:
| Q |
318 |
ttccaaggcatatactttccacttctttcaaaaactacgaattagctttgtcattgttccttatttttatgtggctatttcaagcctataaatcacaaca |
417 |
Q |
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| T |
7150526 |
ttccaaggcctatactttccgcttctttcacaaccaa-gaattagctttgttcttgttcctggttttgctgtggctacttcagacctatagatcacaaca |
7150428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 8107191 - 8107106
Alignment:
| Q |
83 |
ggcaagatgtctatcagtaacaatggcaccaacatcaccacatgtaa-ttgttctttcaatatatttagtgcccatacaaagttat |
167 |
Q |
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| T |
8107191 |
ggcaatatctctatcagtaacaatgacaccaacatcaccacttgtaatttattctttcaacatttttagtgcccaaacaaagttat |
8107106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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