View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16330_high_1 (Length: 443)
Name: NF16330_high_1
Description: NF16330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16330_high_1 |
 | |
|
| [»] scaffold1393 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 22330151 - 22329740
Alignment:
| Q |
14 |
gacatcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaa |
113 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22330151 |
gacatcctcaattctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaatagccttgggttttagatattttccattttgaagaa |
22330052 |
T |
|
| Q |
114 |
gttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22330051 |
gttgtagctccatttctggtctcttacattgcaatgacaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgtgaat |
22329952 |
T |
|
| Q |
214 |
tatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22329951 |
tatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaaaatacttcttttg |
22329852 |
T |
|
| Q |
314 |
gtccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcct |
413 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22329851 |
gtccaatggtgctcattaccgtattgtaggtgtctgactcttttgccaacatttgtgaatttcaaaagtcctagttcattgactctacggtatacttcct |
22329752 |
T |
|
| Q |
414 |
ctgatgatgtcc |
425 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22329751 |
ctgatgatgtcc |
22329740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 239 - 425
Target Start/End: Original strand, 54953877 - 54954063
Alignment:
| Q |
239 |
atgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtatt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54953877 |
atgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtatt |
54953976 |
T |
|
| Q |
339 |
gtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctctgatgatgtcc |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54953977 |
gtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctctgataatgtcc |
54954063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 14808590 - 14808286
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| |||||||||| || || |||||||||||||| |||||| || | | |||||||| |||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
14808590 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacagccttgggtttcaaatattttccatttggaagaagt |
14808491 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
| || |||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| || || |
|
|
| T |
14808490 |
tttaactccatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaacta |
14808391 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||| |||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
14808390 |
tattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggt |
14808291 |
T |
|
| Q |
316 |
ccaat |
320 |
Q |
| |
|
||||| |
|
|
| T |
14808290 |
ccaat |
14808286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 324
Target Start/End: Original strand, 38969559 - 38969724
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
38969559 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
38969658 |
T |
|
| Q |
259 |
atgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||||| | || ||||||||| | || ||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
38969659 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtg |
38969724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 1935112 - 1935238
Alignment:
| Q |
194 |
acattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagat |
293 |
Q |
| |
|
|||||||| || |||| || |||||||||| |||| ||||| ||||| ||||| ||||| ||||| || || |||| |||||||||| | || | | || |
|
|
| T |
1935112 |
acattcatgacagtgttaaatatattgtcaaaaaaattcttctcaatatgcatgacatcgagattgtgccttaatagattatctttccaatatagcaaat |
1935211 |
T |
|
| Q |
294 |
cccagaagatacttcttttggtccaat |
320 |
Q |
| |
|
|||| || ||||||||||| ||||||| |
|
|
| T |
1935212 |
cccaaaaaatacttctttttgtccaat |
1935238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 10799907 - 10799995
Alignment:
| Q |
218 |
ttgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatact |
306 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||| | || ||||| ||||| || ||||| |
|
|
| T |
10799907 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatact |
10799995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 4806315 - 4806718
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4806315 |
catcctcaactctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaacagccttgggttttagatattttccattttgaagaagt |
4806414 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
4806415 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaatta |
4806514 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4806515 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggt |
4806614 |
T |
|
| Q |
316 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4806615 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
4806714 |
T |
|
| Q |
416 |
gatg |
419 |
Q |
| |
|
|||| |
|
|
| T |
4806715 |
gatg |
4806718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 12764932 - 12765335
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12764932 |
catcctcaactctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaacagccttgggttttagatattttccattttgaagaagt |
12765031 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
12765032 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaatta |
12765131 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12765132 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggt |
12765231 |
T |
|
| Q |
316 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12765232 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
12765331 |
T |
|
| Q |
416 |
gatg |
419 |
Q |
| |
|
|||| |
|
|
| T |
12765332 |
gatg |
12765335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 41 - 368
Target Start/End: Complemental strand, 13566859 - 13566532
Alignment:
| Q |
41 |
caaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagttgtagctccatttctggtctcttac |
140 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||| ||| ||||||||| | ||||||||||| ||||| |||||| |||||||||||||| |||| |
|
|
| T |
13566859 |
caaacagattttgcttcatcagaggttagactaaaaacagctttgggttttcaaaattttccatttggaagagattgtagttccatttctggtcttttac |
13566760 |
T |
|
| Q |
141 |
aatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaat |
240 |
Q |
| |
|
||| | | ||| ||| | ||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
13566759 |
aataaaccgacaaacccagtttagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaatattcttttcaat |
13566660 |
T |
|
| Q |
241 |
gtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtattgt |
340 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||| ||||||| || ||||| || |||||||||||| |||||| ||||| | || |||| |
|
|
| T |
13566659 |
gtgcataacatcaagattatgtcttagtaaattgtctttccagtaaggaaggtcccaaaaaatacttcttttgatccaattgtgcttttccccatattca |
13566560 |
T |
|
| Q |
341 |
gggtgtctgactcttttgccaacatctg |
368 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
13566559 |
tggtatctgattcttttgccaacatctg |
13566532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 2766033 - 2765927
Alignment:
| Q |
98 |
tttccattttgaagaagttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacat |
197 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||| ||| ||||| || | |||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
2766033 |
tttccatttgaaagaagttgtagcttaatttctagtctcttataatataatggtaaattcattctagccttctcattatcttttgttttaccgcagacat |
2765934 |
T |
|
| Q |
198 |
tcatcac |
204 |
Q |
| |
|
||||||| |
|
|
| T |
2765933 |
tcatcac |
2765927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 324
Target Start/End: Original strand, 7302262 - 7302427
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
7302262 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
7302361 |
T |
|
| Q |
259 |
atgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||||| | || ||||||||| | || ||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
7302362 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtg |
7302427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 324
Target Start/End: Original strand, 18338145 - 18338310
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
18338145 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
18338244 |
T |
|
| Q |
259 |
atgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||||| | || ||||||||| | || ||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
18338245 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtg |
18338310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Original strand, 7407147 - 7407550
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7407147 |
catcctcaactctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaacagccttgggttttagatattttccattttgaagaagt |
7407246 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
7407247 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaatta |
7407346 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7407347 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggt |
7407446 |
T |
|
| Q |
316 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7407447 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
7407546 |
T |
|
| Q |
416 |
gatg |
419 |
Q |
| |
|
|||| |
|
|
| T |
7407547 |
gatg |
7407550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 14899461 - 14899109
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagca-ttaagactataaatagccttgggttttagatattttccattttgaagaag |
114 |
Q |
| |
|
|||| |||||||||| || || |||||||||||||| |||||| || ||||| ||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
14899461 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaag-ctataaacagccttgggtttcagatattttccatttggaagaag |
14899363 |
T |
|
| Q |
115 |
ttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatt |
214 |
Q |
| |
|
|| || ||| || |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||| || | |
|
|
| T |
14899362 |
ttttaactcaatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttaccagagacattcatcactgtgttaact |
14899263 |
T |
|
| Q |
215 |
atattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttgg |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||| |||||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
14899262 |
atattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttgg |
14899163 |
T |
|
| Q |
315 |
tccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctg |
368 |
Q |
| |
|
|||||| ||| || ||||||| | || ||||||||||| ||||||||||| |
|
|
| T |
14899162 |
tccaattgtgttctacaccgtatccttcgtatctgactctttggccaacatctg |
14899109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1393 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold1393
Description:
Target: scaffold1393; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 42 - 425
Target Start/End: Complemental strand, 534 - 151
Alignment:
| Q |
42 |
aaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagttgtagctccatttctggtctcttaca |
141 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
534 |
aaacagattttgcttcatcagcagtaagactataaatagccttgggttttagatattttccattttgaagaagttgtagctccatttctggtctcttaca |
435 |
T |
|
| Q |
142 |
atgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
434 |
atgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaattatattgtcacaaaagttcttttcaatg |
335 |
T |
|
| Q |
242 |
tgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtattgtg |
341 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
334 |
tgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtattgtg |
235 |
T |
|
| Q |
342 |
ggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctctgatgatgtcc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
234 |
ggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctctgatgttgtcc |
151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 23010837 - 23010434
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23010837 |
catcctcaattctttcaaccattgacaaacagattttgcttcatcatcagtaagactataaacagccttggattttagatattttccattttgaagaagt |
23010738 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
23010737 |
tgtagctccatttatggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttagcagagacattcatcactatgtgaatta |
23010638 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
23010637 |
tattgtcacaaaagttcttttcaatgtgcataacatcaaaattatgtctcagtaaattatctttccagtaagggagatcccagaagatactccttttggt |
23010538 |
T |
|
| Q |
316 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctct |
415 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23010537 |
ccaatggtgctcgttaccgtattttgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
23010438 |
T |
|
| Q |
416 |
gatg |
419 |
Q |
| |
|
|||| |
|
|
| T |
23010437 |
gatg |
23010434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 326
Target Start/End: Complemental strand, 20149399 - 20149113
Alignment:
| Q |
40 |
acaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagttgtagctccatttctggtctctta |
139 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||||||||||||||| || ||||||||||| ||||| | ||||| ||||||||| |||||||| |
|
|
| T |
20149399 |
acaaacagattttgcttcatcagaggttagactaaaaatagccttgggttttcgaaattttccatttggaagaggctgtagttccatttctagtctctta |
20149300 |
T |
|
| Q |
140 |
caatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaa |
239 |
Q |
| |
|
|||| || | ||| |||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||| |||| |||||||||| |
|
|
| T |
20149299 |
caatacaccgacaaatccagtctagccttctcattatcttttgttttacctgagacattcatcactgtgtgaagtatattgtcaaaaaaattcttttcaa |
20149200 |
T |
|
| Q |
240 |
tgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtgct |
326 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| | ||||| || ||||| || |||||||||||| |||||| ||||| |
|
|
| T |
20149199 |
tgtgcataacatcaagattatgtctcagtaaattgtctttccaataaggaaggtcccaaaaaatacttcttttgatccaattgtgct |
20149113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 324
Target Start/End: Original strand, 33905201 - 33905366
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
33905201 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
33905300 |
T |
|
| Q |
259 |
atgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||||| | || ||||||||| | || ||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
33905301 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtg |
33905366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 28498057 - 28498239
Alignment:
| Q |
91 |
tagatattttccattttgaagaagttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttacta |
190 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28498057 |
tagatattttccattttgaagaaattgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttacca |
28498156 |
T |
|
| Q |
191 |
gagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaatt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28498157 |
gagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaatt |
28498239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 368
Target Start/End: Complemental strand, 14322831 - 14322503
Alignment:
| Q |
40 |
acaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagttgtagctccatttctggtctctta |
139 |
Q |
| |
|
|||||||||||||||||||| || | |||||| ||| ||| ||||||||| || ||||||||||| ||||| ||||||| |||||||||||||| ||| |
|
|
| T |
14322831 |
acaaacagattttgcttcattagaggttagactaaaaacagctttgggttttcgaaattttccatttggaagaggttgtagttccatttctggtctttta |
14322732 |
T |
|
| Q |
140 |
caatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaa |
239 |
Q |
| |
|
|||| | | ||| |||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||| |||| |||||||||| |
|
|
| T |
14322731 |
caataaaccgacaaatccagtctagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaaaattcttttcaa |
14322632 |
T |
|
| Q |
240 |
tgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtattg |
339 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |||||| ||||||| || |||||||| |||||||||||| |||| | ||||| | || |||| |
|
|
| T |
14322631 |
tgtgcataacatcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttgatccagttgtgcttttccccatattc |
14322532 |
T |
|
| Q |
340 |
tgggtgtctgactcttttgccaacatctg |
368 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
14322531 |
atggtatctgattcttttgccaacatctg |
14322503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 324
Target Start/End: Complemental strand, 28955247 - 28955117
Alignment:
| Q |
194 |
acattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagat |
293 |
Q |
| |
|
|||| |||||| |||| || ||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||| | || ||||| | |
|
|
| T |
28955247 |
acatccatcactgtgttaaatatgttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggt |
28955148 |
T |
|
| Q |
294 |
cccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||| || |||||| |||| ||||| ||||| |
|
|
| T |
28955147 |
cccaaaatatacttttttttgtccagtggtg |
28955117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 31137 - 31441
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| |||||||||| || || |||||||||||||| |||||| || | | |||||||| |||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
31137 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacagccttgggtttcaaatattttccatttggaagaagt |
31236 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
| || |||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| || || |
|
|
| T |
31237 |
tttaactccatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaacta |
31336 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||| |||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
31337 |
tattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggt |
31436 |
T |
|
| Q |
316 |
ccaat |
320 |
Q |
| |
|
||||| |
|
|
| T |
31437 |
ccaat |
31441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 21597176 - 21596825
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| |||||||||| || || |||||||||||||| |||||| || | | |||||||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
21597176 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacagccttgggtttcagatattttccatttggaagaagt |
21597077 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
| | |||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| || || |
|
|
| T |
21597076 |
tttgactccatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaacta |
21596977 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||| |||||| || ||||||||||| | || |||||||||||||| |
|
|
| T |
21596976 |
tattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccag-aagggagatccaaaaaaatacttcttttggt |
21596878 |
T |
|
| Q |
316 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctg |
368 |
Q |
| |
|
||||| ||| || ||||||| | || ||||||||||| ||||||||||| |
|
|
| T |
21596877 |
ccaattgtgttctacaccgtatccttcgtatctgactctttggccaacatctg |
21596825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 324
Target Start/End: Original strand, 4965358 - 4965523
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
4965358 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
4965457 |
T |
|
| Q |
259 |
atgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||||| | || ||||||||| | || ||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
4965458 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtg |
4965523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 324
Target Start/End: Complemental strand, 35596967 - 35596802
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
35596967 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
35596868 |
T |
|
| Q |
259 |
atgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||||| | || ||||||||| | || ||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
35596867 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtg |
35596802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 37367684 - 37367789
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
37367684 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
37367783 |
T |
|
| Q |
259 |
atgtct |
264 |
Q |
| |
|
|||||| |
|
|
| T |
37367784 |
atgtct |
37367789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 267
Target Start/End: Original strand, 19594117 - 19594253
Alignment:
| Q |
128 |
tctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaa |
227 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || ||||||||||||||| |||| ||||| ||||||||||| | | |||| |||||||||||| | |
|
|
| T |
19594117 |
tctggtctcttacaattcaatggcatgtcaatcatagccttctcattatactttg-tttacctaagacattcatcgc--tatgaagtatattgtcacata |
19594213 |
T |
|
| Q |
228 |
agttcttttcaatgtgcataacatcaagattatgtctcaa |
267 |
Q |
| |
|
| | |||| || |||||||| ||||| || ||||||||| |
|
|
| T |
19594214 |
aagtatttttaacgtgcataagatcaaaatcatgtctcaa |
19594253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 358453 - 358757
Alignment:
| Q |
16 |
catcatcaattctttcaatcattgacaaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagt |
115 |
Q |
| |
|
|||| |||||||||| || || |||||||||||||| |||||| || | | |||||||| | |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
358453 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacaaccttgggtttcagatattttccatttggaagaagt |
358552 |
T |
|
| Q |
116 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaatta |
215 |
Q |
| |
|
| || |||||| |||||||||||||||| | |||||| ||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |||| || || |
|
|
| T |
358553 |
tttaactccatatctggtctcttacaatactctggcaaatccattctagctttctcgttatcttttgttttaccagagacattcatcactgtgttaacta |
358652 |
T |
|
| Q |
216 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggt |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | ||||||||| | |||||| |||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
358653 |
tattgtcacaaaaattcttttcaatgtgcataacatccatattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggt |
358752 |
T |
|
| Q |
316 |
ccaat |
320 |
Q |
| |
|
||||| |
|
|
| T |
358753 |
ccaat |
358757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 41 - 368
Target Start/End: Complemental strand, 23959447 - 23959121
Alignment:
| Q |
41 |
caaacagattttgcttcatcagcattaagactataaatagccttgggttttagatattttccattttgaagaagttgtagctccatttctggtctcttac |
140 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||| ||| ||||||||| || ||||||||||| ||||| ||||||| |||||||||||||| |||| |
|
|
| T |
23959447 |
caaacagattttgcttcatcagaggttagacta-aaacagctttgggttttcgaaattttccatttggaagaggttgtagttccatttctggtcttttac |
23959349 |
T |
|
| Q |
141 |
aatgcaatggcaagtccattctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaat |
240 |
Q |
| |
|
||| | | ||| |||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
23959348 |
aataaaccgacaaatccagtctagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaatattcttttcaat |
23959249 |
T |
|
| Q |
241 |
gtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtattgt |
340 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||| ||||||| || |||||||| |||||||||||| |||| | ||||| | || |||| |
|
|
| T |
23959248 |
gtgcataacatcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttgatccagttgtgcttttccccatattca |
23959149 |
T |
|
| Q |
341 |
gggtgtctgactcttttgccaacatctg |
368 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
23959148 |
tggtatctgattcttttgccaacatctg |
23959121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 87 - 320
Target Start/End: Original strand, 2064035 - 2064267
Alignment:
| Q |
87 |
gttttagatattttccattttgaagaagttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgattt |
186 |
Q |
| |
|
|||| ||||| ||| ||||| ||||||||| || || ||| || |||||||||||| |||||||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
2064035 |
gtttcagatacttttcatttggaagaagttttaacttcatatccagtctcttacaatataatggcaaatccattccagccttctcattatcttttgtttt |
2064134 |
T |
|
| Q |
187 |
actagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaa |
286 |
Q |
| |
|
|| |||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||| ||||| |
|
|
| T |
2064135 |
accagagacattcatcattgtgtgaactatattgtcacaaaaattcttttcaatgtgcataacatcaagattatgtcttagtaaattgtctttccagtaa |
2064234 |
T |
|
| Q |
287 |
gggagatcccagaagatacttcttttggtccaat |
320 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||| |
|
|
| T |
2064235 |
gggaggtccca-aaaatacttcttttggtccaat |
2064267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 22123614 - 22123744
Alignment:
| Q |
194 |
acattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagat |
293 |
Q |
| |
|
|||| |||||| |||| || ||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||| | || ||||| | |
|
|
| T |
22123614 |
acatccatcactgtgttaaatatgttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggt |
22123713 |
T |
|
| Q |
294 |
cccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
||| || |||||| |||| ||||| ||||| |
|
|
| T |
22123714 |
tccaaaatatacttttttttgtccagtggtg |
22123744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 37571027 - 37571186
Alignment:
| Q |
159 |
ttctagccttctcattatcttttgatttactagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagatt |
258 |
Q |
| |
|
|||||||||||||| | ||||||| ||| | ||||| |||||| |||| || ||| |||||| | | ||||| ||||||||||| ||||||||||| |
|
|
| T |
37571027 |
ttctagccttctcagtgtcttttgtttttcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
37571126 |
T |
|
| Q |
259 |
atgtctcaataaattatctttctagtaagggagatcccagaagatacttcttttggtcca |
318 |
Q |
| |
|
|||||| | || ||||||||| | || ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
37571127 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtcca |
37571186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 57732 - 57862
Alignment:
| Q |
194 |
acattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagat |
293 |
Q |
| |
|
|||| |||||| |||| || ||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| | || ||||||||| | || ||||| | |
|
|
| T |
57732 |
acatccatcactgtgttaaatatgttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggt |
57831 |
T |
|
| Q |
294 |
cccagaagatacttcttttggtccaatggtg |
324 |
Q |
| |
|
|||| || ||||| |||| ||||| ||||| |
|
|
| T |
57832 |
cccaaaatatactcttttttgtccagtggtg |
57862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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