View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16330_high_11 (Length: 333)
Name: NF16330_high_11
Description: NF16330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16330_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 11119753 - 11119442
Alignment:
| Q |
1 |
atgaagaccttaagccattcaggaatgatactgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaa |
100 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119753 |
atgaagacctcaagccattcagtaatgatactgatgcaactgcaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaa |
11119654 |
T |
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| Q |
101 |
ggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagca |
200 |
Q |
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||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119653 |
ggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagca |
11119554 |
T |
|
| Q |
201 |
gacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgata |
300 |
Q |
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| T |
11119553 |
gacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgata |
11119454 |
T |
|
| Q |
301 |
ggtttgatgatg |
312 |
Q |
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|||||||||||| |
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| T |
11119453 |
ggtttgatgatg |
11119442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 12206250 - 12205970
Alignment:
| Q |
1 |
atgaagaccttaagccattcaggaatgatactgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaa |
100 |
Q |
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|||||||| | |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||| |
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| T |
12206250 |
atgaagacgtcaagccaatcaggaatgatactgatgcaaccttaatgtctgattatgctcgtgataagaactgtgatgttgaa------------cctaa |
12206163 |
T |
|
| Q |
101 |
ggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagca |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12206162 |
ggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagca |
12206063 |
T |
|
| Q |
201 |
gacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggtt |
293 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12206062 |
gacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggctggggtt |
12205970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 32741457 - 32741144
Alignment:
| Q |
1 |
atgaagaccttaagccattcaggaatgatactgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaa |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
32741457 |
atgaagacctcaagccattcaggaatgatactgatgcaactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacctaa |
32741358 |
T |
|
| Q |
101 |
ggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagca |
200 |
Q |
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||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| | |
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| T |
32741357 |
ggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagta |
32741258 |
T |
|
| Q |
201 |
gacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgata |
300 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| ||| |||||||||| |||| |||| ||||||||||||| |||||||| |||||||||| |
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| T |
32741257 |
gacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgctttgatgatagtgaagaagagaagatggctgcggttgatgatg |
32741158 |
T |
|
| Q |
301 |
ggtttgatgatgtc |
314 |
Q |
| |
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|||||||| ||||| |
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| T |
32741157 |
ggtttgataatgtc |
32741144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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