View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16330_high_13 (Length: 323)
Name: NF16330_high_13
Description: NF16330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16330_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 3744806 - 3745099
Alignment:
| Q |
30 |
agcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744806 |
agcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttct |
3744905 |
T |
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| Q |
130 |
ttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatca |
229 |
Q |
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| T |
3744906 |
ttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatca |
3745005 |
T |
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| Q |
230 |
cgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtg |
323 |
Q |
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| T |
3745006 |
cgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtg |
3745099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 51 - 242
Target Start/End: Original strand, 48303031 - 48303219
Alignment:
| Q |
51 |
agcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctc |
150 |
Q |
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| T |
48303031 |
agcattctctggtaacacaaatttcctcataaacttaccaacccttctttccatcttcaaatattt---accaccttctttctcttcttctctcttcctt |
48303127 |
T |
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| Q |
151 |
tctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatga |
242 |
Q |
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| T |
48303128 |
tcaccgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatga |
48303219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 10462270 - 10462162
Alignment:
| Q |
134 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
233 |
Q |
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| T |
10462270 |
cttcttccctcttcctctcgccggttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaa |
10462171 |
T |
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| Q |
234 |
cacgtatga |
242 |
Q |
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||| |||| |
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| T |
10462170 |
tacgaatga |
10462162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 10539854 - 10539977
Alignment:
| Q |
134 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
233 |
Q |
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||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||| ||| |||| || || |||| |
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| T |
10539854 |
cttcttccctcttcctctcgccggttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaa |
10539953 |
T |
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| Q |
234 |
cacgtatgaattctgatcttcctt |
257 |
Q |
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| T |
10539954 |
cacgtacgagttttgatattcctt |
10539977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 10543464 - 10543543
Alignment:
| Q |
100 |
tccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatc |
179 |
Q |
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||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || ||||| |
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| T |
10543464 |
tccattctcaaatacttaacaccttcttctacttcttcttccctcttcctttctccacttatcacaaccacattttcatc |
10543543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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