View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16330_high_2 (Length: 395)
Name: NF16330_high_2
Description: NF16330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16330_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 17075396 - 17075755
Alignment:
| Q |
17 |
catcatcatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagagga |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| || ||||| |||||||||| ||| ||| |
|
|
| T |
17075396 |
catcataatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcgga |
17075495 |
T |
|
| Q |
117 |
agaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatc |
216 |
Q |
| |
|
|||||||||| || || ||||| ||||||||||||||| |||| |||||||||||| ||||||| |||||||||||| | |||||||| || |||||||| |
|
|
| T |
17075496 |
agaaagtgaacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatc |
17075595 |
T |
|
| Q |
217 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaac |
316 |
Q |
| |
|
||||| ||||||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| ||||||||||||||| || |||||||| |||||| |
|
|
| T |
17075596 |
taaattgagaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaac |
17075695 |
T |
|
| Q |
317 |
aatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgtc |
376 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
17075696 |
aatgattgggttaattgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 11053470 - 11053702
Alignment:
| Q |
17 |
catcatcatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagagga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||| || || || | | || || ||| |
|
|
| T |
11053470 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgtgcaaacaatcgga |
11053569 |
T |
|
| Q |
117 |
agaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatc |
216 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| |
|
|
| T |
11053570 |
agaaagtgaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaatc |
11053669 |
T |
|
| Q |
217 |
taaatcgagaaaattacaaggttcggatcgtct |
249 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| |
|
|
| T |
11053670 |
taaatcgaggaaattacaaggttcagaccgtct |
11053702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
245 |
cgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgc |
344 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
345 |
atgggaatgagaaggttgtgattgatgatgt |
375 |
Q |
| |
|
||| ||||||||| || ||| |||||||||| |
|
|
| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 17684263 - 17683905
Alignment:
| Q |
17 |
catcatcatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtg-caaaacccagttccatcgttaataagagg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||| |||||| | | || || | | | | || || || |
|
|
| T |
17684263 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcctattttccaatccgatatttgt-gcaaacaaacgg |
17684165 |
T |
|
| Q |
116 |
aagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaat |
215 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
17684164 |
aagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatcttaaaat |
17684065 |
T |
|
| Q |
216 |
ctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaa |
315 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
17684064 |
ctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcggttaa |
17683965 |
T |
|
| Q |
316 |
caatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
375 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || | | |||||||||| |
|
|
| T |
17683964 |
taatgattgggttaattgggtggcagtgcatgggaatgagaaagtagcggttgatgatgt |
17683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 36160245 - 36159902
Alignment:
| Q |
17 |
catcatcatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagagga |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| | ||||| ||| |||| ||||||||| |||| | || | || | | | | ||||| || | | |
|
|
| T |
36160245 |
catcatcatggtgatgctggtgttatttcgtcgtccaggaaaaagcttaaaaaagtggtgaggccaattgtacaatcttgcactaatgttaagaaacgaa |
36160146 |
T |
|
| Q |
117 |
agaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatc |
216 |
Q |
| |
|
|||||||| |||| |||||||| || ||||||| ||||||||| || ||||| |||| || | || ||| | || || ||||| || ||| ||||||| |
|
|
| T |
36160145 |
agaaagtggatggtatcttgcgacattcggtgaatagtttgaaaaaagtggcaaggttaccgaccaatgattgatcaacagttttgcacattctaaaatc |
36160046 |
T |
|
| Q |
217 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaac |
316 |
Q |
| |
|
|||| | ||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||| ||| ||| ||||| || || | ||||||||| |
|
|
| T |
36160045 |
taaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagttcttcttcatgttcagttaac |
36159946 |
T |
|
| Q |
317 |
aatgattgggttaattgggtggctgtgcatgggaatgagaaggt |
360 |
Q |
| |
|
|| ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
36159945 |
aacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 26741893 - 26741535
Alignment:
| Q |
17 |
catcatcatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgcaaaacccagttccatcgttaataagagga |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||| | ||||| ||| || | || || | ||||| ||| ||| |
|
|
| T |
26741893 |
catcatcatggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcgga |
26741794 |
T |
|
| Q |
117 |
agaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttccaccgttttacatattttaaaatc |
216 |
Q |
| |
|
|||||||||||| |||||| ||| || |||||||||||||||| ||||||| ||| |||| | |||||||||||||| |||||||| || |||||||| |
|
|
| T |
26741793 |
agaaagtgaatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatc |
26741694 |
T |
|
| Q |
217 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggtagttcctcgtcggggtcagttaac |
316 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| || ||||| ||||||||| |
|
|
| T |
26741693 |
taagtcgagaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaac |
26741594 |
T |
|
| Q |
317 |
aatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgatgt |
375 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
26741593 |
aacgattgggttaattgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 93 - 373
Target Start/End: Original strand, 10559722 - 10560002
Alignment:
| Q |
93 |
ccagttccatcgttaataagaggaagaaagtgaatgggatcttgcggcactcggtgattagtttgaagaaggtggcgcggttgcctagtaaagatcgttc |
192 |
Q |
| |
|
||||| |||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| || | ||||||| ||||||| || |
|
|
| T |
10559722 |
ccagtaccattgttaacaagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatc |
10559821 |
T |
|
| Q |
193 |
caccgttttacatattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggtaagggtggtttcctcgggagtttcggatggt |
292 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||| ||||||| ||| |||||| |
|
|
| T |
10559822 |
caccgttttacacatcttaaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggt |
10559921 |
T |
|
| Q |
293 |
agttcctcgtcggggtcagttaacaatgattgggttaattgggtggctgtgcatgggaatgagaaggttgtgattgatgat |
373 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
10559922 |
agttcttcctcgggttcagataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 10558419 - 10558491
Alignment:
| Q |
16 |
acatcatcatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgtggcctagtgca |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
10558419 |
acatcatcatggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgca |
10558491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University