View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16330_high_3 (Length: 385)
Name: NF16330_high_3
Description: NF16330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16330_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 58 - 365
Target Start/End: Original strand, 16013794 - 16014101
Alignment:
| Q |
58 |
ccctacacaacatatccgtaaaatcagtgcagccagatccacgctagtcggagactatccgtaaaatccatacatccatgacagaaaatatggctttgaa |
157 |
Q |
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| T |
16013794 |
ccctacacaacatatccgtaaaatcagtgcagccagatccacgctagtcggagactatccgtaaaatccatacatccatgacagaaaatatggctttgaa |
16013893 |
T |
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| Q |
158 |
gtgaaaaaataaaattgtacaactctttacaattaaacaaggtttctactaatataggatacatgtagcaaataactaaacaagataaataaattcagga |
257 |
Q |
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| T |
16013894 |
gtgaaaaaataaaatcgtacaactctttacaattaaacaaggtttctactaatataggatacatgtagcaaataactaaacaagataaataaattcagga |
16013993 |
T |
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| Q |
258 |
tcctagatatcacctgttcatctgtgttcctttatcatcaagaagtggtaataaggaattcttcaaagagaaatgccaattcagaggaactgggcgtttt |
357 |
Q |
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| T |
16013994 |
tcctagatatcacctgttcatctgtgttcctttatcatcaagaagtggtaataaggaattcttcaaagaaaaatgccaattcagaggaactgggcgtttt |
16014093 |
T |
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| Q |
358 |
gatgatgt |
365 |
Q |
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| T |
16014094 |
gaagatgt |
16014101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 16013764 - 16013796
Alignment:
| Q |
8 |
ttgatagaccaaaataaaaacaattgtcttccc |
40 |
Q |
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| T |
16013764 |
ttgatagaccaaaataaaaacaattgtcttccc |
16013796 |
T |
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