View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16330_high_5 (Length: 368)
Name: NF16330_high_5
Description: NF16330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16330_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 50 - 368
Target Start/End: Original strand, 42445377 - 42445695
Alignment:
| Q |
50 |
caagcactattgacagaaccattgtggcaacagcagtgcttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctctccaac |
149 |
Q |
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| T |
42445377 |
caagcactattgacagaaccattgtggcaacagcagtgcttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctctccaac |
42445476 |
T |
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| Q |
150 |
actgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaaggttgtt |
249 |
Q |
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| T |
42445477 |
actgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaaggttgtt |
42445576 |
T |
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| Q |
250 |
ttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaactcaatg |
349 |
Q |
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| T |
42445577 |
ttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaactcaatg |
42445676 |
T |
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| Q |
350 |
gtttcagtctctcagctga |
368 |
Q |
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| T |
42445677 |
gtttcagtctctcagctga |
42445695 |
T |
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