View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16330_high_7 (Length: 356)

Name: NF16330_high_7
Description: NF16330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16330_high_7
NF16330_high_7
[»] chr4 (5 HSPs)
chr4 (1-346)||(25023608-25023965)
chr4 (33-207)||(12216030-12216198)
chr4 (33-108)||(28572466-28572538)
chr4 (33-63)||(18746367-18746397)
chr4 (34-70)||(12838842-12838878)
[»] chr1 (1 HSPs)
chr1 (33-217)||(25425703-25425882)
[»] chr2 (1 HSPs)
chr2 (33-207)||(13516922-13517092)
[»] chr7 (2 HSPs)
chr7 (63-110)||(44193035-44193082)
chr7 (153-217)||(12864687-12864751)
[»] chr3 (2 HSPs)
chr3 (33-108)||(27820124-27820196)
chr3 (33-75)||(32198047-32198088)
[»] chr6 (7 HSPs)
chr6 (126-217)||(24320076-24320167)
chr6 (142-204)||(13155508-13155570)
chr6 (142-204)||(13160364-13160426)
chr6 (26-60)||(34479492-34479526)
chr6 (182-215)||(12747675-12747708)
chr6 (38-204)||(13183544-13183706)
chr6 (143-199)||(17352449-17352505)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 25023965 - 25023608
Alignment:
Q  1 cttaaatagtctacttaagatatttgtttatatactcatggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaatgttgatg 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25023965 cttaaatagtctacttaagatagttgtttatatactcatggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaaggttgatg 25023866  T
Q  101 agagactctttttgttgatggtcttagtgcttgccttcttgttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  25023865 agagactctttttgttgatggtcttagtgcttgccttcttgttgaactgttgagttctgaatgaatgtttgtgaatggaatctcttgtatttataggcaa 25023766  T
Q  201 gttttcacttgggtttgtattgtaaaacctagatttctccccaaacccgcat-----------aatgttgttttttcacggaatcacacgcgccccg-cc 288  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||           |||||||||||||||||||||| ||||||||||| ||    
T  25023765 gttttcacttggttttgtattgtaaaacctagatttctccctaaacccgcataaaaacaacaaaatgttgttttttcacggaatcgcacgcgccccgccc 25023666  T
Q  289 cgtacatggtttggcacgcctcacacatggcagtaaaatatagagcattttctctctg 346  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25023665 cgtacatggtttggcgcgcctcacacatggcagtaaaatatagagcattttctctctg 25023608  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 12216198 - 12216030
Alignment:
Q  33 tactcatggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaatgttgatgagagactctttttgttgatggtcttagtgctt 132  Q
    |||||||||||||||||||| |||||||   ||| |||||||||| ||| |||||||||| ||||| ||||  ||| ||| ||||||| || ||  | ||    
T  12216198 tactcatggtaactaaagacgaattaca---aaagaaataaaacatactctaagaacaaaggttgaggaga--ctccttt-gttgatgctcctaacgttt 12216105  T
Q  133 gccttcttgttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttttca 207  Q
    | |||| | |||||| || ||||||| |||||   |||||||||| |||||||||||||||||| ||||||||||    
T  12216104 gtcttcatcttgaaccgtcaagttctgaatgagaatttgtgaatgaaatctcttgtatttatagtcaagttttca 12216030  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 28572466 - 28572538
Alignment:
Q  33 tactcatggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaatgttgatgagagactc 108  Q
    |||||||||||||||||||||||||||   |||| |||||||||| ||| ||||| |||||||||| |||||||||    
T  28572466 tactcatggtaactaaagacaaattac---aaaagaaataaaacatactctaagagcaaatgttgacgagagactc 28572538  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 18746397 - 18746367
Alignment:
Q  33 tactcatggtaactaaagacaaattacagaa 63  Q
    |||||||||||||||||||||||||||||||    
T  18746397 tactcatggtaactaaagacaaattacagaa 18746367  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 12838878 - 12838842
Alignment:
Q  34 actcatggtaactaaagacaaattacagaaaaataaa 70  Q
    ||||||||||||||||||||||||||| | |||||||    
T  12838878 actcatggtaactaaagacaaattacaaagaaataaa 12838842  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 25425703 - 25425882
Alignment:
Q  33 tactcatggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaatgttgatgagagactctttttgttgatggtcttagtgctt 132  Q
    ||||||| ||||| ||||||||||||||   ||| ||||||| |||||| |||||||||| ||| | ||||||||| ||   |||| | || ||| ||||    
T  25425703 tactcattgtaaccaaagacaaattaca---aaagaaataaa-caaactctaagaacaaaggttaaggagagactccttca-ttgacgctcctagcgctt 25425797  T
Q  133 gccttcttgttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttttcacttgggtttg 217  Q
    |||||| | |||||| |  ||||||| ||||||  ||||||||||| |  ||||||||| ||| ||||||||||| |||| ||||    
T  25425798 gccttcctcttgaaccgccaagttctgaatgaaaatttgtgaatgtgaaatcttgtattaataagcaagttttcaattggttttg 25425882  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 13517092 - 13516922
Alignment:
Q  33 tactcatggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaatgttgatgagagactctttttgttgatggtcttagtgctt 132  Q
    ||||||||||||||||||| ||||||   ||||| ||||||||||   |||| ||||||| ||||| |||| ||| | |  ||||||  |||||||| ||    
T  13517092 tactcatggtaactaaagataaatta---aaaaagaaataaaacattatatatgaacaaaggttgaggagaaact-tctccgttgattctcttagtgttt 13516997  T
Q  133 gccttcttgttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttttca 207  Q
    |||||| | ||||||||| |||||||  ||||   ||||||| || |  || || ||||||||||||||||||||    
T  13516996 gccttcctcttgaactgtcaagttctggatgacaatttgtgagtgaatgctattatatttataggcaagttttca 13516922  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 44193082 - 44193035
Alignment:
Q  63 aaaataaataaaacaaactataagaacaaatgttgatgagagactctt 110  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  44193082 aaaataaataaaacatacaataagaacaaaggttgatgagagactctt 44193035  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 12864687 - 12864751
Alignment:
Q  153 agttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttttcacttgggtttg 217  Q
    |||||||||||||  ||||||||||  | |||||| |||||||||||||||||||  ||||||||    
T  12864687 agttctaaatgaacatttgtgaatgagaactcttggatttataggcaagttttcagctgggtttg 12864751  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 27820196 - 27820124
Alignment:
Q  33 tactcatggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaatgttgatgagagactc 108  Q
    ||||| ||||||||||||||||||| ||   ||| |||||||||| |||||||||||||  ||||| |||||||||    
T  27820196 tactcgtggtaactaaagacaaattgca---aaagaaataaaacatactataagaacaatggttgaggagagactc 27820124  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 32198047 - 32198088
Alignment:
Q  33 tactcatggtaactaaagacaaattacagaaaaataaataaaa 75  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  32198047 tactcatggtaactaaagacaaattacataaaaa-aaataaaa 32198088  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 24320076 - 24320167
Alignment:
Q  126 agtgcttgccttcttgttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttttcacttgggtttg 217  Q
    |||| |||||||||| ||||||||  ||||||| |||||||  ||||||| |  | ||||||||||| || |||||||| || |||||||||    
T  24320076 agtgtttgccttcttcttgaactgacaagttctgaatgaataattgtgaacgagagctcttgtatttgtacgcaagtttccagttgggtttg 24320167  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 13155508 - 13155570
Alignment:
Q  142 ttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttt 204  Q
    |||||| || ||||| | |||||||  ||||||||| || |||||||||||||||||||||||    
T  13155508 ttgaaccgtcaagttttgaatgaataattgtgaatgaaaactcttgtatttataggcaagttt 13155570  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 13160364 - 13160426
Alignment:
Q  142 ttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttt 204  Q
    |||||| || ||||| | |||||||  ||||||||| || |||||||||||||||||||||||    
T  13160364 ttgaaccgtcaagttttgaatgaataattgtgaatgaaaactcttgtatttataggcaagttt 13160426  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 34479492 - 34479526
Alignment:
Q  26 gtttatatactcatggtaactaaagacaaattaca 60  Q
    |||||| ||||||||||||||||||||||||||||    
T  34479492 gtttatttactcatggtaactaaagacaaattaca 34479526  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 12747675 - 12747708
Alignment:
Q  182 ctcttgtatttataggcaagttttcacttgggtt 215  Q
    |||||||||||||||||||||||||| |||||||    
T  12747675 ctcttgtatttataggcaagttttcaattgggtt 12747708  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 13183544 - 13183706
Alignment:
Q  38 atggtaactaaagacaaattacagaaaaataaataaaacaaactataagaacaaatgttgatgagagactctttttgttgatggtcttagtgcttgcctt 137  Q
    |||||||||||||| |||||||| |  |||   ||||||| ||| ||| |||||| ||||| ||||||||| |   ||||||| ||||||  ||| | ||    
T  13183544 atggtaactaaagagaaattacaaatgaat---taaaacatactctaaaaacaaaggttgaagagagactcctcc-gttgatgctcttagcacttacatt 13183639  T
Q  138 cttgttgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggcaagttt 204  Q
    | | |||||| || |||||||||||||||  |||||||||  | | |||||| || |||||||||||    
T  13183640 cctcttgaaccgtcaagttctaaatgaataattgtgaatgataacccttgtacttgtaggcaagttt 13183706  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 17352505 - 17352449
Alignment:
Q  143 tgaactgttaagttctaaatgaatgtttgtgaatgtaatctcttgtatttataggca 199  Q
    ||||||||| |||||| |||||   |||||||||| || ||||||||||||||||||    
T  17352505 tgaactgttgagttctgaatgagaatttgtgaatgaaagctcttgtatttataggca 17352449  T

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