View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16331_high_2 (Length: 326)

Name: NF16331_high_2
Description: NF16331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16331_high_2
NF16331_high_2
[»] chr7 (6 HSPs)
chr7 (5-319)||(18395911-18396234)
chr7 (205-264)||(27073633-27073692)
chr7 (205-264)||(27204621-27204680)
chr7 (252-314)||(23565300-23565363)
chr7 (211-312)||(40808414-40808517)
chr7 (218-314)||(36146661-36146759)
[»] chr8 (8 HSPs)
chr8 (197-312)||(11712244-11712361)
chr8 (218-299)||(32902442-32902524)
chr8 (221-299)||(29796578-29796656)
chr8 (166-247)||(7597380-7597462)
chr8 (197-247)||(8153572-8153622)
chr8 (221-274)||(3232092-3232145)
chr8 (197-274)||(8863333-8863409)
chr8 (225-273)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (197-312)||(4560904-4561021)
chr2 (230-274)||(28671797-28671841)
chr2 (229-314)||(11067134-11067221)
chr2 (225-299)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (218-298)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (159-274)||(21704109-21704225)
chr4 (159-274)||(3739397-3739511)
chr4 (225-312)||(6677306-6677394)
chr4 (218-299)||(36463657-36463738)
chr4 (221-264)||(4587792-4587835)
chr4 (219-252)||(43208174-43208207)
[»] chr1 (5 HSPs)
chr1 (225-299)||(8871315-8871390)
chr1 (213-269)||(2263271-2263327)
chr1 (223-299)||(28265821-28265898)
chr1 (199-247)||(25116407-25116455)
chr1 (248-314)||(49918210-49918278)
[»] chr5 (1 HSPs)
chr5 (200-274)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (200-274)||(21156738-21156811)
chr3 (221-274)||(40519479-40519532)
chr3 (221-274)||(2075350-2075403)
chr3 (225-269)||(9666754-9666797)
chr3 (218-274)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 319
Target Start/End: Original strand, 18395911 - 18396234
Alignment:
Q  5 gatggacatcatcaaggaaaacaaatgttgaaatttgtctaaaatatcgacaaaaattgggccgtgatttgcaaaaatcgtgacgcgattttggttaagg 104  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18395911 gatggccataatcaaggaaaacaaatgttgaaatttgtctaaaaaatcgacaaaaattgggccgcgatttgcaaaaatcgtgacgagattttggttaagg 18396010  T
Q  105 t---------tttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 195  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396011 ttttggaggttttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 18396110  T
Q  196 tacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactt 295  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18396111 tacgattttctcggaacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaaggaggtaactt 18396210  T
Q  296 taggttgaatgtctttgatgatgt 319  Q
    ||||||||||||||||| ||||||    
T  18396211 taggttgaatgtctttggtgatgt 18396234  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 27073633 - 27073692
Alignment:
Q  205 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 264  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27073633 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27073692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 27204680 - 27204621
Alignment:
Q  205 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 264  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27204680 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27204621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 23565363 - 23565300
Alignment:
Q  252 agagcttcaagagtgagaaactttgggtatc-aaggaggtaactttaggttgaatgtctttgat 314  Q
    ||||||||||||| ||||||||| || |||| ||||||||||||||||||| |  |||||||||    
T  23565363 agagcttcaagagagagaaacttgggatatcaaaggaggtaactttaggttaagggtctttgat 23565300  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 40808414 - 40808517
Alignment:
Q  211 acttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtc 308  Q
    ||||||||  ||||||  ||||||||||||||||| |||||||  ||| ||||| || |||||| | | ||| ||||||||||||||| |||||| ||||    
T  40808414 acttgtgctctatatagaacttcattcttcatgttataagtaggacttaaagagagataaacttagagaatcaaaggaggtaactttagggttgagtgtc 40808513  T
Q  309 tttg 312  Q
    ||||    
T  40808514 tttg 40808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 36146759 - 36146661
Alignment:
Q  218 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttag-gttgaatgtctttgat 314  Q
    |||||| |||| ||||||||||||| ||||  | ||||||||||||| || |||||| ||  ||| |||||||||||||||| |||||  |||||||||    
T  36146759 cattatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagtgttgagggtctttgat 36146661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 11712361 - 11712244
Alignment:
Q  197 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactt 295  Q
    |||||||||| ||||| |||||| ||||||||  ||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  296 ta-ggttgaatgtctttg 312  Q
    || |||||| ||||||||    
T  11712261 tagggttgagtgtctttg 11712244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 32902524 - 32902442
Alignment:
Q  218 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 299  Q
    |||| ||||||||||||||||||||||||| || || |||||||||| ||||||||| ||  |||| | ||||||||||||||    
T  32902524 cattgtataagacttcattcttcatgttttgaggagggcttcaagagagagaaacttgggaaatcagatgaggtaactttagg 32902442  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 29796656 - 29796578
Alignment:
Q  221 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 299  Q
    |||||||| |||||||||||||||||| || ||| ||||||||| |||||||||  |  ||| |||||||||||||||||    
T  29796656 tatataaggcttcattcttcatgttttgaggaga-cttcaagagagagaaacttgagaaatcaaaggaggtaactttagg 29796578  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 7597380 - 7597462
Alignment:
Q  166 aaatcgtggcacaattagtgaaaattgtgatacga-ttttctcgggacttgtgcattatataagacttcattcttcatgtttt 247  Q
    |||||||||||||||| |||||||| | |  || | |||||||| || ||| ||| |||||||| ||||||||||||||||||    
T  7597380 aaatcgtggcacaattggtgaaaatcggggcacaatttttctcgagatttgagcactatataaggcttcattcttcatgtttt 7597462  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 8153572 - 8153622
Alignment:
Q  197 acgattttctcgggacttgtgcattatataagacttcattcttcatgtttt 247  Q
    |||||||||||||  ||||| ||||||| ||| ||||||||||||||||||    
T  8153572 acgattttctcggatcttgtacattataaaaggcttcattcttcatgtttt 8153622  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 3232145 - 3232092
Alignment:
Q  221 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    |||||||| |||||||||||||||||| |||||||| | |||||  ||||||||    
T  3232145 tatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaactt 3232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 8863333 - 8863409
Alignment:
Q  197 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    ||||||||||| |  | |||||| |||||||| ||||||||||||||||||  || |||||||||||| || ||||||    
T  8863333 acgattttctcagatcatgtgcactatataaggcttcattcttcatgttttgggt-gagcttcaagagagaaaaactt 8863409  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 18141659 - 18141706
Alignment:
Q  225 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaact 273  Q
    |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  18141659 taaggcttcattcttcat-ttttgagtagagcttcaagagagagaaact 18141706  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 4560904 - 4561021
Alignment:
Q  197 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactt 295  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | ||||||||| || |||||| ||  |||| ||||| ||||||    
T  4560904 acgattttctcgggacttgtgcattgtataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactt 4561003  T
Q  296 tag-gttgaatgtctttg 312  Q
    ||| ||||| ||||||||    
T  4561004 tagagttgagtgtctttg 4561021  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 28671797 - 28671841
Alignment:
Q  230 cttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  28671797 cttcattcttcatgttttgagtagggcttcaagagagagaaactt 28671841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 11067134 - 11067221
Alignment:
Q  229 acttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 314  Q
    |||||||||||||| |||| || || |||||||||| ||||||||  ||  ||| ||||||||||||||| |||||| ||||||||||    
T  11067134 acttcattcttcattttttgaggagggcttcaagagagagaaactagggaaatcaaaggaggtaactttatggttgattgtctttgat 11067221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 36773387 - 36773462
Alignment:
Q  225 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 299  Q
    |||||||||||||||||| ||||   |||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  36773387 taagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 36773462  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 19933 - 19854
Alignment:
Q  218 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactttag 298  Q
    ||||||||| ||||||||||||| |||||| ||||| |||||||||| | ||||||| ||  |||||||||||||||||||    
T  19933 cattatatatgacttcattcttcttgttttgagtag-gcttcaagagagtgaaacttgggaaatcaaggaggtaactttag 19854  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 21704225 - 21704109
Alignment:
Q  159 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtaga-gct 257  Q
    |||| |||||||||||||| |||||  ||||||| |  ||||||||  | |||| |||||| ||| |||||||||||| ||||||||||  ||||| |||    
T  21704225 taacgtgaaatcgtggcacgattaggtaaaattggggcacgattttgacaggacatgtgcactatttaagacttcatttttcatgttttgtgtagaggct 21704126  T
Q  258 tcaagagtgagaaactt 274  Q
    ||||||| |||||||||    
T  21704125 tcaagagagagaaactt 21704109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 3739511 - 3739397
Alignment:
Q  159 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagctt 258  Q
    |||| ||||||||||||| |||  ||| |||| | |  ||||||||  |||||| |||||||||| ||||||||||||||||||||||| |||| |  ||    
T  3739511 taacgtgaaatcgtggcaaaatgtgtgtaaatcgaggcacgattttgacgggacatgtgcattatttaagacttcattcttcatgttttgagtaca-ttt 3739413  T
Q  259 caagagtgagaaactt 274  Q
    |||||| |||||||||    
T  3739412 caagagagagaaactt 3739397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 6677306 - 6677394
Alignment:
Q  225 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 312  Q
    |||| |||||||||||||||||| ||||| |||||||||  |||||| || ||||||| ||||||||||||||| |||||| ||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag-gcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttg 6677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 36463738 - 36463657
Alignment:
Q  218 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 299  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||| || |||||| ||  |||| ||||||||||||||||    
T  36463738 cattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttagg 36463657  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 4587792 - 4587835
Alignment:
Q  221 tatataagacttcattcttcatgttttaagtagagcttcaagag 264  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  4587792 tataaaagacttcattcttcatgttttgaggagagcttcaagag 4587835  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 43208207 - 43208174
Alignment:
Q  219 attatataagacttcattcttcatgttttaagta 252  Q
    ||||||||||||||||||||||||||||| ||||    
T  43208207 attatataagacttcattcttcatgttttgagta 43208174  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 8871390 - 8871315
Alignment:
Q  225 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 299  Q
    |||| ||||||||||||||||||  ||||||||||||||| ||||||||  || |||| ||| |||||||||||||    
T  8871390 taaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttagg 8871315  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 2263327 - 2263271
Alignment:
Q  213 ttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgaga 269  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||| ||||||| ||||    
T  2263327 ttgtgcactatataaggcttcattcttcatgttttgtgtagagcgtcaagagagaga 2263271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 28265898 - 28265821
Alignment:
Q  223 tataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 299  Q
    |||||| ||||||||||||| ||||  | ||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  28265898 tataaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 28265821  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 25116407 - 25116455
Alignment:
Q  199 gattttctcgggacttgtgcattatataagacttcattcttcatgtttt 247  Q
    ||||||||| || | |||||| |||||||| ||||||||||||||||||    
T  25116407 gattttctcaggtcatgtgcactatataagtcttcattcttcatgtttt 25116455  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 49918210 - 49918278
Alignment:
Q  248 aagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 314  Q
    ||||||||||| ||||| ||||||||| ||  ||| ||||||||||||||| ||||||| |||||||||    
T  49918210 aagtagagcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgat 49918278  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 5611524 - 5611451
Alignment:
Q  200 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 5611451  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 21156811 - 21156738
Alignment:
Q  200 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 21156738  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 40519532 - 40519479
Alignment:
Q  221 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    |||||||| |||||||| |||||| || |||||||||||||||| |||||||||    
T  40519532 tatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaactt 40519479  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 2075403 - 2075350
Alignment:
Q  221 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    |||||||| |||||||||||||||||| |||   |||||||||| |||||||||    
T  2075403 tatataaggcttcattcttcatgttttgagtgaggcttcaagagagagaaactt 2075350  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 9666797 - 9666754
Alignment:
Q  225 taagacttcattcttcatgttttaagtagagcttcaagagtgaga 269  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  9666797 taagacttcattcttcat-ttttgagtagagcttcaagagagaga 9666754  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 37761820 - 37761765
Alignment:
Q  218 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 274  Q
    ||||||||||||||| |||||||||||||| ||| | |||||||||| ||| |||||    
T  37761820 cattatataagactttattcttcatgtttttagttg-gcttcaagagagagtaactt 37761765  T

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