View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16331_low_2 (Length: 634)

Name: NF16331_low_2
Description: NF16331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16331_low_2
NF16331_low_2
[»] chr7 (8 HSPs)
chr7 (19-625)||(41562519-41563126)
chr7 (233-328)||(46657038-46657133)
chr7 (434-503)||(46657195-46657264)
chr7 (42-229)||(41511369-41511556)
chr7 (70-158)||(48532739-48532827)
chr7 (116-155)||(16490924-16490963)
chr7 (344-383)||(46657134-46657173)
chr7 (117-155)||(48398546-48398584)
[»] chr5 (3 HSPs)
chr5 (105-164)||(32075089-32075148)
chr5 (76-165)||(20155209-20155298)
chr5 (117-157)||(11292348-11292388)
[»] chr4 (1 HSPs)
chr4 (105-169)||(8136517-8136581)
[»] chr8 (2 HSPs)
chr8 (115-158)||(33005114-33005157)
chr8 (116-158)||(3770202-3770244)
[»] chr6 (2 HSPs)
chr6 (116-158)||(845018-845060)
chr6 (116-158)||(870302-870344)


Alignment Details
Target: chr7 (Bit Score: 570; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 19 - 625
Target Start/End: Original strand, 41562519 - 41563126
Alignment:
Q  19 agaagtggttaaaagaagagaattttgaagagaggactaaaggaaaaggagttatagttaaaggatgggctccacaagttgaaatattgtcacatccttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41562519 agaagtggttaaaagaagagaattttgaagagaggactaaaggaaaaggagttatagttaaaggatgggctccacaagttgaaatattgtcacatccttc 41562618  T
Q  119 aactggtggatttttatctcattgtggttggaattcaacaatggaagcaatttcaagcggtgtaccaatgataacttggccaatgtttgctgaacaattc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41562619 aactggtggatttttatctcattgtggttggaattcaacaatggaagcaatttcaagtggtgtaccaatgataacttggccaatgtttgctgaacaattc 41562718  T
Q  219 tttaatgagaagttgattgtgcaagtgcttaagattggtgtgaggattggtgttgaggcttttgttgatccaatggagacatataaaggtgagaaagtgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41562719 tttaatgagaagttgattgtgcaagtgcttaagattggtgtgaggattggtgttgaggcttttgttgatccaatggagatatataaaggtgagaaagtgt 41562818  T
Q  319 tggtgaagaaagaggatgtgaagagggctattgaaaatcttatggagaatggtgtggaaggagaacagagaagaaacaaagctaaagagataaaagatat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41562819 tggtgaagaaagaggatgtgaagagggctattgaaaatcttatggagaatggtgtggaaggagaacagagaagaaacaaagcaaaagagataaaagatat 41562918  T
Q  419 ggcttataaggctgttgaagatggtggatcttctgattcaaattgcaaattgtttataca--agaaattgtagagaaaagttcataatcaatgattaagc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  41562919 ggcttataaggctgttgaagatggtggatcttctgattcaaattgcaaattgtttatacaagagaaattgtagagaaaagttcataatcaat-attaagc 41563017  T
Q  517 ataccaaaatagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttgactttacaaatttaaagtgacaaataagtctttaat 616  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41563018 ataccaaaaaagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttgactttacaaatttaaagtgacacataagtctttaat 41563117  T
Q  617 gatgatgtc 625  Q
    |||||||||    
T  41563118 gatgatgtc 41563126  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 46657038 - 46657133
Alignment:
Q  233 gattgtgcaagtgcttaagattggtgtgaggattggtgttgaggcttttgttgatccaatggagacatataaaggtgagaaagtgttggtgaagaa 328  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||||||    
T  46657038 gattgtgcaagttcttaagattggtgtgaggattggtgttgaagctgttgttgatccaatggagatatttaaaggtgagaaagtgttggtgaagaa 46657133  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 434 - 503
Target Start/End: Original strand, 46657195 - 46657264
Alignment:
Q  434 tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagaaaagttcataa 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  46657195 tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagcaaagctcataa 46657264  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 229
Target Start/End: Original strand, 41511369 - 41511556
Alignment:
Q  42 tttgaagagaggactaaaggaaaaggagttatagttaaaggatgggctccacaagttgaaatattgtcacatccttcaactggtggatttttatctcatt 141  Q
    ||||| || |||| |||||| | |||| ||||| ||| ||| ||||| |||||| | |  ||||| |||||| |||||| ||||||||||||  ||||||    
T  41511369 tttgaggaaaggaataaagggagaggacttataattagagggtgggccccacaaatggtgatattatcacattcttcaattggtggatttttgactcatt 41511468  T
Q  142 gtggttggaattcaacaatggaagcaatttcaagcggtgtaccaatgataacttggccaatgtttgctgaacaattctttaatgagaa 229  Q
    ||||||||||||||||| | ||||  ||       |||||||||||| ||||||||||| | |||||||| ||||| || ||||||||    
T  41511469 gtggttggaattcaacacttgaagggataagttttggtgtaccaatggtaacttggccattatttgctgaccaatttttgaatgagaa 41511556  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 48532739 - 48532827
Alignment:
Q  70 ttatagttaaaggatgggctccacaagttgaaatattgtcacatccttcaactggtggatttttatctcattgtggttggaattcaaca 158  Q
    ||||| ||| ||| ||||||||||||||   |||||| ||||| ||||||| ||| ||||| ||| | |||||||| ||||||||||||    
T  48532739 ttataattagaggttgggctccacaagtgctaatattatcacacccttcaattggaggattcttaacacattgtggatggaattcaaca 48532827  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 16490924 - 16490963
Alignment:
Q  116 ttcaactggtggatttttatctcattgtggttggaattca 155  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  16490924 ttcaactggtgggtttttatctcactgtggttggaattca 16490963  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 46657134 - 46657173
Alignment:
Q  344 ggctattgaaaatcttatggagaatggtgtggaaggagaa 383  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  46657134 ggctattgaaaagcttatggtgaatggtgtggaaggagaa 46657173  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 48398546 - 48398584
Alignment:
Q  117 tcaactggtggatttttatctcattgtggttggaattca 155  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  48398546 tcaactggtgggtttttaactcattgtggttggaattca 48398584  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 32075148 - 32075089
Alignment:
Q  105 ttgtcacatccttcaactggtggatttttatctcattgtggttggaattcaacaatggaa 164  Q
    |||||||||||||| | |||||||||||  ||||||||||||||||||||||||| ||||    
T  32075148 ttgtcacatccttctattggtggattttggtctcattgtggttggaattcaacaaaggaa 32075089  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 20155209 - 20155298
Alignment:
Q  76 ttaaaggatgggctccacaagttgaaatattgtcacatccttcaactggtggatttttatctcattgtggttggaattcaacaatggaag 165  Q
    ||||||||||||| |||||| ||  |||| | || |||||||||| ||| ||||| ||  | |||||||| |||||||||||||| ||||    
T  20155209 ttaaaggatgggcaccacaaattttaatactttctcatccttcaattggaggattcttgacacattgtggatggaattcaacaattgaag 20155298  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 11292388 - 11292348
Alignment:
Q  117 tcaactggtggatttttatctcattgtggttggaattcaac 157  Q
    ||||| |||||||| ||||| ||||||||||||||||||||    
T  11292388 tcaacaggtggattcttatcacattgtggttggaattcaac 11292348  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 8136581 - 8136517
Alignment:
Q  105 ttgtcacatccttcaactggtggatttttatctcattgtggttggaattcaacaatggaagcaat 169  Q
    |||||||||||| ||| ||| ||||| ||| | ||||||||||||||||| ||||||||||||||    
T  8136581 ttgtcacatcctgcaattggaggattcttaacacattgtggttggaattctacaatggaagcaat 8136517  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 33005157 - 33005114
Alignment:
Q  115 cttcaactggtggatttttatctcattgtggttggaattcaaca 158  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  33005157 cttcaactggtggatttttaacacattgtggttggaattcaaca 33005114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 3770244 - 3770202
Alignment:
Q  116 ttcaactggtggatttttatctcattgtggttggaattcaaca 158  Q
    |||||| |||||||||||| | |||||||||||||||||||||    
T  3770244 ttcaacaggtggatttttaacacattgtggttggaattcaaca 3770202  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 845060 - 845018
Alignment:
Q  116 ttcaactggtggatttttatctcattgtggttggaattcaaca 158  Q
    ||||| |||||| |||||| |||||||||||||||||||||||    
T  845060 ttcaattggtgggtttttaactcattgtggttggaattcaaca 845018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 870344 - 870302
Alignment:
Q  116 ttcaactggtggatttttatctcattgtggttggaattcaaca 158  Q
    ||||| |||||| |||||| |||||||||||||||||||||||    
T  870344 ttcaattggtgggtttttaactcattgtggttggaattcaaca 870302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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