View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16331_low_4 (Length: 379)
Name: NF16331_low_4
Description: NF16331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16331_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 43380254 - 43380603
Alignment:
| Q |
1 |
tgctaatgttcgcatttgctactcccccttttcaagaacagcccacactgctaatgttgttgcaacagcattgaatattccttttcatgcctctcagtgt |
100 |
Q |
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| T |
43380254 |
tgctaatgttcgcatttgctactcccccttttcaagaacaacccacactgctaatgttgttgcaacagcattgaatattccttttcatgcctctcattgt |
43380353 |
T |
|
| Q |
101 |
aaggtcatccaagatcttcgagagcgctactttggtccttcctttgagcttttatctcatgataaggtaactcattcataaatggctcaatttgtgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43380354 |
aaggtcatccaagatcttcgagagcgctactttggtccttcctttgagcttttatctcatgataaggtaactcattcataaatggctcaatttgtgtcat |
43380453 |
T |
|
| Q |
201 |
gacttttaagacagagaatcagtttccaacaaatgaaaagtagtttgttaaactcattttctcttttcannnnnnnatcaacaaacagtatgatcatatt |
300 |
Q |
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|| |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
43380454 |
gagttttaagacagagaatcagttt-taagtcatg------agtttgttaaactcattttctcttttcatttttttatc----aatagtatgatcatatt |
43380542 |
T |
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| Q |
301 |
tgggaaatagatgagaaagatcctctttttgggccagaaggaggggaaagtgttaatgatg |
361 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
43380543 |
tgggaaatagatgagaaagatcctcttgttgggccagaaggaggggaaagtgttaaggatg |
43380603 |
T |
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