View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16331_low_5 (Length: 348)
Name: NF16331_low_5
Description: NF16331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16331_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 42535809 - 42536120
Alignment:
| Q |
20 |
acctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatg |
119 |
Q |
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| T |
42535809 |
acctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatg |
42535908 |
T |
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| Q |
120 |
tgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctnnnnnnntgtcagttacagaggctttggagggtataaccaccctctattat |
219 |
Q |
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| T |
42535909 |
tgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctaaaaaaatgtcagttacagaggctttggagggtataaccaccctctattat |
42536008 |
T |
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| Q |
220 |
aatgaagaccgccaggaacacgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactgatgataaaaaaggaataggtt |
319 |
Q |
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| T |
42536009 |
gatgaagacc----ggaacgcgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactaatgataaaaaaggaataggtt |
42536104 |
T |
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| Q |
320 |
ttattgtttcttctca |
335 |
Q |
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|||||||||||||||| |
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| T |
42536105 |
ttattgtttcttctca |
42536120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 42530093 - 42530418
Alignment:
| Q |
20 |
acctgatcatttcttactgcagggatgactctgaagatcaatcgatggttaccaatgtgataggttccatcaatgtgagcaacatcttatcggggaaatg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||| |||||| ||||||||||| |
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| T |
42530093 |
acctgatcatttcttactgcagggatgactctgaagatcaatcgaaggaaaccaatgcggtaggttccatcaatgtgagcagcatcttgtcggggaaatg |
42530192 |
T |
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| Q |
120 |
tgtggcgaaaattaatgctacaaaagctttggagtgcattgattcatctnnnnnnntgtcagtt------acagaggctttggagggtataaccaccctc |
213 |
Q |
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| T |
42530193 |
tgtggcgaaaattaatgctgcaaaagctttggagtgcattgattcatctcaaataatgtcagttccagtcccagaggctttggagggtataaccaccctc |
42530292 |
T |
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| Q |
214 |
ta--------ttataatgaagaccgccaggaacacgatttatacgggtaacagacatggtcatgttcatgtctggtccaactccaaccaactgatgataa |
305 |
Q |
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|| |||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42530293 |
tattatgaatttatgatgaagacc----ggaacgcgatttatacgggtaacagacatggtcttgttcatgtctggtccaactccaaccaactgatgataa |
42530388 |
T |
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| Q |
306 |
aaaaggaataggttttattgtttcttctca |
335 |
Q |
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| T |
42530389 |
aaaaggaataggttttattgtttcttctca |
42530418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 27826012 - 27826073
Alignment:
| Q |
82 |
ggttccatcaatgtgagcaacatcttatcggggaaatgtgtggcgaaaattaatgctacaaa |
143 |
Q |
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| T |
27826012 |
ggttccatcaatgtgagcaacatcttgacagggaaatgtgtggcgaaaattaatgctgcaaa |
27826073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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