View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16331_low_7 (Length: 253)

Name: NF16331_low_7
Description: NF16331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16331_low_7
NF16331_low_7
[»] chr1 (22 HSPs)
chr1 (95-232)||(10926905-10927045)
chr1 (139-241)||(13441924-13442024)
chr1 (134-198)||(8966030-8966094)
chr1 (118-239)||(23988927-23989050)
chr1 (12-93)||(5489777-5489857)
chr1 (12-93)||(43571105-43571185)
chr1 (117-214)||(10927831-10927930)
chr1 (134-241)||(40805559-40805666)
chr1 (12-93)||(48498981-48499061)
chr1 (13-93)||(50448280-50448359)
chr1 (12-98)||(38113214-38113299)
chr1 (133-198)||(31522577-31522642)
chr1 (12-93)||(44112678-44112758)
chr1 (12-93)||(48119629-48119709)
chr1 (12-92)||(7447828-7447906)
chr1 (146-233)||(31915245-31915332)
chr1 (15-93)||(37814779-37814856)
chr1 (12-57)||(4401364-4401409)
chr1 (36-93)||(14427348-14427404)
chr1 (12-93)||(35003295-35003375)
chr1 (57-93)||(41065154-41065190)
chr1 (61-93)||(45705826-45705858)
[»] chr6 (27 HSPs)
chr6 (133-241)||(18203137-18203244)
chr6 (117-241)||(12881725-12881850)
chr6 (133-241)||(22873512-22873620)
chr6 (133-241)||(22888955-22889063)
chr6 (95-236)||(34374024-34374167)
chr6 (133-241)||(22910498-22910606)
chr6 (12-93)||(7292748-7292828)
chr6 (12-93)||(26670028-26670108)
chr6 (12-93)||(7273354-7273434)
chr6 (12-93)||(9698352-9698432)
chr6 (133-193)||(3541947-3542007)
chr6 (133-193)||(30049617-30049677)
chr6 (133-193)||(30051904-30051964)
chr6 (12-93)||(7367550-7367630)
chr6 (137-240)||(12778690-12778791)
chr6 (12-92)||(30735984-30736063)
chr6 (133-191)||(32361109-32361167)
chr6 (12-93)||(13743240-13743320)
chr6 (12-93)||(13748740-13748820)
chr6 (12-93)||(30014344-30014424)
chr6 (12-92)||(24204006-24204085)
chr6 (12-92)||(27441544-27441623)
chr6 (142-214)||(18719997-18720069)
chr6 (12-93)||(26466800-26466880)
chr6 (15-93)||(3213401-3213478)
chr6 (16-93)||(31109245-31109321)
chr6 (139-203)||(8047663-8047727)
[»] chr5 (13 HSPs)
chr5 (133-241)||(18252120-18252228)
chr5 (139-238)||(21845225-21845324)
chr5 (12-93)||(41334682-41334762)
chr5 (12-93)||(7617134-7617214)
chr5 (12-93)||(2614668-2614748)
chr5 (12-93)||(18033983-18034063)
chr5 (138-183)||(19677629-19677674)
chr5 (12-93)||(22512306-22512386)
chr5 (12-93)||(32473413-32473493)
chr5 (12-92)||(5256997-5257076)
chr5 (12-92)||(25915007-25915085)
chr5 (18-93)||(33855068-33855142)
chr5 (12-93)||(33801470-33801550)
[»] chr7 (25 HSPs)
chr7 (95-241)||(11001063-11001211)
chr7 (133-231)||(4303119-4303217)
chr7 (143-243)||(1369513-1369614)
chr7 (134-197)||(1786420-1786483)
chr7 (133-235)||(8915450-8915551)
chr7 (12-93)||(24001031-24001111)
chr7 (12-93)||(35069722-35069802)
chr7 (12-93)||(42538450-42538530)
chr7 (133-241)||(1217489-1217595)
chr7 (12-93)||(41861675-41861757)
chr7 (12-93)||(5810943-5811023)
chr7 (12-92)||(44326180-44326259)
chr7 (133-241)||(13883012-13883121)
chr7 (12-93)||(5015396-5015476)
chr7 (12-93)||(5194250-5194330)
chr7 (12-93)||(42972853-42972933)
chr7 (134-240)||(11228423-11228528)
chr7 (12-93)||(9216303-9216382)
chr7 (12-93)||(43317444-43317524)
chr7 (12-92)||(10573751-10573830)
chr7 (12-92)||(43343643-43343722)
chr7 (12-92)||(44416953-44417032)
chr7 (12-93)||(24280615-24280695)
chr7 (12-93)||(40236920-40237000)
chr7 (12-92)||(4638218-4638297)
[»] chr4 (30 HSPs)
chr4 (139-241)||(22716314-22716416)
chr4 (139-241)||(22988801-22988903)
chr4 (137-239)||(10494626-10494728)
chr4 (12-93)||(1771285-1771365)
chr4 (133-233)||(7634998-7635098)
chr4 (13-93)||(12496957-12497036)
chr4 (12-93)||(21687007-21687087)
chr4 (12-93)||(25051694-25051774)
chr4 (12-93)||(27316732-27316812)
chr4 (12-93)||(41878407-41878487)
chr4 (133-221)||(6659658-6659745)
chr4 (13-93)||(27550310-27550389)
chr4 (12-93)||(711961-712041)
chr4 (12-93)||(27864565-27864645)
chr4 (12-93)||(55966365-55966445)
chr4 (133-193)||(13085423-13085483)
chr4 (12-92)||(43514705-43514784)
chr4 (12-93)||(23035981-23036061)
chr4 (12-93)||(28982841-28982921)
chr4 (12-93)||(28988474-28988554)
chr4 (12-93)||(33703142-33703222)
chr4 (12-92)||(39631102-39631182)
chr4 (12-92)||(27893861-27893940)
chr4 (12-92)||(43735744-43735823)
chr4 (12-98)||(48463469-48463554)
chr4 (12-93)||(17619171-17619251)
chr4 (12-93)||(35017734-35017813)
chr4 (12-92)||(43949820-43949900)
chr4 (13-93)||(960890-960969)
chr4 (57-93)||(49229727-49229763)
[»] chr2 (27 HSPs)
chr2 (133-237)||(35681910-35682014)
chr2 (136-223)||(280294-280381)
chr2 (133-231)||(31635997-31636095)
chr2 (95-241)||(32162204-32162351)
chr2 (133-198)||(27952654-27952719)
chr2 (100-241)||(33053121-33053263)
chr2 (117-193)||(2165624-2165702)
chr2 (12-93)||(1750415-1750495)
chr2 (12-94)||(19047157-19047238)
chr2 (12-93)||(12302272-12302352)
chr2 (12-93)||(16096748-16096828)
chr2 (12-92)||(43490420-43490499)
chr2 (118-240)||(36648576-36648700)
chr2 (12-93)||(43335782-43335862)
chr2 (133-238)||(22011087-22011192)
chr2 (12-93)||(30838633-30838713)
chr2 (12-93)||(43114558-43114638)
chr2 (12-92)||(11825673-11825752)
chr2 (12-92)||(41281993-41282072)
chr2 (57-92)||(4299483-4299518)
chr2 (12-79)||(14285691-14285757)
chr2 (117-189)||(23457389-23457462)
chr2 (12-93)||(16803969-16804049)
chr2 (12-93)||(16843251-16843331)
chr2 (36-93)||(18491706-18491762)
chr2 (57-93)||(966897-966933)
chr2 (46-94)||(34817829-34817876)
[»] chr8 (26 HSPs)
chr8 (136-237)||(23573240-23573341)
chr8 (98-240)||(2688874-2689014)
chr8 (12-93)||(11582767-11582847)
chr8 (12-93)||(36743502-36743582)
chr8 (12-92)||(42699259-42699338)
chr8 (12-96)||(45397314-45397397)
chr8 (133-183)||(22922179-22922229)
chr8 (12-93)||(29705363-29705443)
chr8 (12-92)||(20148762-20148841)
chr8 (12-92)||(26125637-26125716)
chr8 (133-189)||(26377776-26377832)
chr8 (13-93)||(30660762-30660841)
chr8 (12-92)||(30912581-30912660)
chr8 (12-92)||(42295197-42295276)
chr8 (12-93)||(2165982-2166062)
chr8 (12-93)||(42197454-42197534)
chr8 (137-241)||(24577811-24577915)
chr8 (12-92)||(29800969-29801048)
chr8 (133-204)||(22512377-22512448)
chr8 (12-93)||(2546997-2547077)
chr8 (12-93)||(35181517-35181597)
chr8 (118-180)||(2188719-2188783)
chr8 (12-93)||(5754904-5754984)
chr8 (12-93)||(34304789-34304869)
chr8 (57-93)||(19386633-19386669)
chr8 (12-92)||(33630012-33630091)
[»] chr3 (23 HSPs)
chr3 (133-241)||(365880-365987)
chr3 (12-92)||(27748565-27748644)
chr3 (12-93)||(4190284-4190364)
chr3 (12-93)||(25413682-25413762)
chr3 (12-93)||(36150131-36150211)
chr3 (12-93)||(54246167-54246247)
chr3 (12-97)||(40480746-40480830)
chr3 (12-93)||(42100689-42100769)
chr3 (12-93)||(47191045-47191124)
chr3 (12-93)||(54237097-54237177)
chr3 (12-94)||(42394438-42394519)
chr3 (12-93)||(24688421-24688501)
chr3 (12-93)||(45126947-45127027)
chr3 (12-93)||(46941054-46941134)
chr3 (12-92)||(53581877-53581956)
chr3 (133-222)||(3064068-3064158)
chr3 (12-93)||(40808866-40808946)
chr3 (133-241)||(8536660-8536768)
chr3 (12-90)||(29558253-29558330)
chr3 (12-93)||(53273703-53273783)
chr3 (12-92)||(1078229-1078307)
chr3 (147-229)||(2473000-2473084)
chr3 (12-93)||(9434125-9434205)
[»] scaffold0054 (3 HSPs)
scaffold0054 (133-241)||(10351-10459)
scaffold0054 (133-214)||(49041-49122)
scaffold0054 (133-214)||(37443-37523)
[»] scaffold0119 (1 HSPs)
scaffold0119 (12-93)||(686-766)
[»] scaffold0157 (1 HSPs)
scaffold0157 (13-93)||(23441-23520)
[»] scaffold0110 (1 HSPs)
scaffold0110 (133-193)||(45945-46005)
[»] scaffold0038 (1 HSPs)
scaffold0038 (12-94)||(112655-112736)
[»] scaffold0385 (1 HSPs)
scaffold0385 (12-93)||(11252-11332)
[»] scaffold0187 (2 HSPs)
scaffold0187 (12-93)||(14207-14287)
scaffold0187 (12-93)||(24535-24615)
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-92)||(45738-45817)
[»] scaffold0024 (1 HSPs)
scaffold0024 (133-233)||(145442-145542)
[»] scaffold0240 (1 HSPs)
scaffold0240 (188-242)||(15704-15758)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 10927045 - 10926905
Alignment:
Q  95 taataaaattaggctgaaatagaaaattacaaaggaaactc---ctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataa 191  Q
    |||||||||||| |||||||| |||||||| || |||| ||   ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||    
T  10927045 taataaaattagactgaaatataaaattactaatgaaaatcatcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataa 10926946  T
Q  192 agagctttccatgcatgttgactactccaatggacaagaga 232  Q
    ||| ||| ||||||||||||||| |||||||| | ||||||    
T  10926945 agaacttcccatgcatgttgactcctccaatgaataagaga 10926905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 13441924 - 13442024
Alignment:
Q  139 catcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagaccaccc 238  Q
    |||||||||||||||||| ||||||| ||||  || |||||||||| ||||||||||||| ||||||||||||||| ||||||||  ||||||| || ||    
T  13441924 catcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgttgactcctccaatgagcaagagatcatcc 13442021  T
Q  239 tcc 241  Q
    |||    
T  13442022 tcc 13442024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 8966030 - 8966094
Alignment:
Q  134 tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctt 198  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||    
T  8966030 tcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagctt 8966094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 23989050 - 23988927
Alignment:
Q  118 aaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgacta 215  Q
    ||||||| ||||||||  |||||||| |||||||| ||||| ||||||||||||||| |||||||| || || |||||||||| || |||||||| |||     
T  23989050 aaattactaaggaaaccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgttaactc 23988951  T
Q  216 ctccaatggacaagagaccaccct 239  Q
    || |||||  ||||||| ||||||    
T  23988950 cttcaatgagcaagagatcaccct 23988927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 5489857 - 5489777
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  5489857 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 5489777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 43571105 - 43571185
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||||| |||||| ||||||||||||||||| ||||||||||    
T  43571105 gagatgaacttaccaaaatatccctaatacatggggtgtacaatga-ggtgtaggaataaagggtgttcatgtaacattttc 43571185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 10927930 - 10927831
Alignment:
Q  117 aaaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgact 214  Q
    |||||||| ||||||||  ||||||| ||||||||||||| | |||||||||||||| |||||||||||| | |||||||| ||  |||||| |||||||    
T  10927930 aaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagagtttctcatgcaagttgact 10927831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 40805666 - 40805559
Alignment:
Q  134 tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagac 233  Q
    ||||||||||||||||||||||| | ||||| |||||| ||||||||  || |||||| ||| ||  |||||||| ||||| |||| ||| ||||| ||     
T  40805666 tcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgactcctccgatgaacaagggat 40805567  T
Q  234 caccctcc 241  Q
    ||||||||    
T  40805566 caccctcc 40805559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 48498981 - 48499061
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||||||||| ||||||| |||| | |||||  ||||||| |||||||| ||||||||||    
T  48498981 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatg-gagtgtagaaataaagagtgttcatgtaacattttc 48499061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 50448280 - 50448359
Alignment:
Q  13 agatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||  |||||||| ||||||||||||||||| |||| | |||||  ||||||| |||||||| ||||||||||    
T  50448280 agatgaacttacaaaaatatccctaatacataaggtgtacaatg-gagtgtagaaataaagagtgttcatgtaacattttc 50448359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 38113214 - 38113299
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttcttaat 98  Q
    |||||||| ||| |||||| ||  |||| |||  |||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  38113214 gagatgaatttaccaaaatgtcattaatgcatggggtgtacaat-agggtgtatgattaaagggtgttcatataacattttcctaat 38113299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 31522642 - 31522577
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctt 198  Q
    |||||||||||| | | ||||||| ||||||||||||| |||||||||| || |||||| ||||||    
T  31522642 ctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataatgagctt 31522577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 44112758 - 44112678
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  44112758 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 44112678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 48119709 - 48119629
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||||||  |||| |||  |||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  48119709 gagatgaatttaccaaaatatccttaatgcatggggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 48119629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 7447906 - 7447828
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| |||||||||| ||||||||  |||||| |||| || |||| ||||||||| ||||||| |||||||||    
T  7447906 gagatgaacttatcaaaatatctgtaatacat-gggtgtacaatg-ggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 31915332 - 31915245
Alignment:
Q  146 ctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgca-tgttgactactccaatggacaagagac 233  Q
    ||||||||||| |||||||||| ||| ||||||||| || | || ||||| ||||||| || |||||||| |||||||| |||||||||    
T  31915332 ctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttgactcctccaatgaacaagagac 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 37814856 - 37814779
Alignment:
Q  15 atgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||| ||| |||||||||  ||||||||  |||||| ||||||  ||||||||||||||||||| || ||||||||||    
T  37814856 atgaatttaccaaaatatccttaatacatggggtgtacaatgaga-tgtatgaataaagggtgtttatgtaacattttc 37814779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 4401409 - 4401364
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatga 57  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||    
T  4401409 gagatgaacttaccaaaatatctctaatacatggggtgtacaatga 4401364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 14427404 - 14427348
Alignment:
Q  36 taatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||| ||| ||||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  14427404 taatgcatgaggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 14427348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 35003375 - 35003295
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||||||  ||||  ||  |||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  35003375 gagatgaatttaccaaaatatccttaatgtatggggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 35003295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 41065190 - 41065154
Alignment:
Q  57 agggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  41065190 agggtgtatgattaaagggtgttcatgtaacattttc 41065154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 45705858 - 45705826
Alignment:
Q  61 tgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||| |||||||||||||||||||||||||    
T  45705858 tgtatgattaaagggtgttcatataacattttc 45705826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 18203244 - 18203137
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||| ||| |||| ||||||||    
T  18203244 ctcctacatcagtctcctccacctctgaagaactcgacc-cgagttctcattttaataaagagttttccatgcatgttgactcctcgaatgaacaagaga 18203146  T
Q  233 ccaccctcc 241  Q
    |||||||||    
T  18203145 ccaccctcc 18203137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 12881850 - 12881725
Alignment:
Q  117 aaaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgact 214  Q
    |||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||| |||| |||||||  ||| |||| ||| |||||||||||||||    
T  12881850 aaaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttgact 12881752  T
Q  215 actccaatggacaagagaccaccctcc 241  Q
     || ||||| |||||||||||||||||    
T  12881751 tcttcaatgaacaagagaccaccctcc 12881725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 22873620 - 22873512
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    |||||||||||||||| ||||||| | | ||| |||| | | |||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||    
T  22873620 ctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaagaga 22873521  T
Q  233 ccaccctcc 241  Q
    | |||||||    
T  22873520 caaccctcc 22873512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 22889063 - 22888955
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    |||||||||||||||| ||||||| | | ||| | |||| | |||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||    
T  22889063 ctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaagaga 22888964  T
Q  233 ccaccctcc 241  Q
    | |||||||    
T  22888963 caaccctcc 22888955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 34374024 - 34374167
Alignment:
Q  95 taataaaattaggctgaaatagaaaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaa 192  Q
    ||||||||||   ||||||||  ||| ||| ||||||||  || ||||| |||||||||||| | |||||||||| ||| |||||||||||| |||||||    
T  34374024 taataaaattgaactgaaataataaaatactaaggaaaccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaa 34374123  T
Q  193 gagctttccatgcatgttgactactccaatggacaagagaccac 236  Q
    ||| || |||||||||||||||  ||||||| ||||||||||||    
T  34374124 gagattcccatgcatgttgactcttccaatgaacaagagaccac 34374167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 22910606 - 22910498
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    |||||||||||||||| ||||||| | | ||| | |||| | |||||||||||||||||||||||| ||||| || |||||| |||||||| ||||||||    
T  22910606 ctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaacaagaga 22910507  T
Q  233 ccaccctcc 241  Q
    | |||||||    
T  22910506 caaccctcc 22910498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 7292828 - 7292748
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||| | ||||||||||    
T  7292828 gagatgaacttaccaaaatatccctaatacatagggtgtataatga-ggtgtatgaataaatggtgttcttgtaacattttc 7292748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 26670028 - 26670108
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||| ||||||||||    
T  26670028 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatga-ggtgtaggaataaagggtgttcatgtaacattttc 26670108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 7273354 - 7273434
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| |||||||||||||||||||  |||||| ||| | |||||| ||||||||||||||||| ||||||||||    
T  7273354 gagatgaacttaccaaaatatctctaatacatggggtgtacaat-aaggtgtaggaataaagggtgttcatgtaacattttc 7273434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 9698352 - 9698432
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  9698352 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 9698432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 3542007 - 3541947
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaag 193  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||    
T  3542007 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 3541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 30049677 - 30049617
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaag 193  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||    
T  30049677 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30049617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 30051964 - 30051904
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaag 193  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||    
T  30051964 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 30051904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 7367630 - 7367550
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  | |||| ||||||| |||||||||||| | ||||||||||||||||||    
T  7367630 gagatgaacttaccaaaatatccctaatacatgggatgtacaatgagg-tgtatgaataaatgatgttcatataacattttc 7367550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 12778690 - 12778791
Alignment:
Q  137 tacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagaccac 236  Q
    |||||||||||||||||||| ||||||||| |||| | | |||||||| ||||  |||| || |  |||||||||||| |||||||| ||||||||| ||    
T  12778690 tacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgttgactcctccaatgaacaagagacaac 12778787  T
Q  237 cctc 240  Q
    ||||    
T  12778788 cctc 12778791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 30736063 - 30735984
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| ||||||||| ||||||| |||| ||||||| |||||||  |||||||| |||||||||    
T  30736063 gagatgaacttaccaaaatatcactaatacatgaggtgtacaatg-gggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 32361167 - 32361109
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataa 191  Q
    ||||||||| ||||| |||||||| | || |||||||||||||||||||||||||||||    
T  32361167 ctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 13743240 - 13743320
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||  || |||||||||||| ||||||||| ||||||||||    
T  13743240 gagatgaacttaccaaaatatccctaatacatggggtgtacaatt-ggatgtatgaataaaaggtgttcatgtaacattttc 13743320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 13748740 - 13748820
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||  || |||||||||||| ||||||||| ||||||||||    
T  13748740 gagatgaacttaccaaaatatccctaatacatggggtgtacaatt-ggatgtatgaataaaaggtgttcatgtaacattttc 13748820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 30014424 - 30014344
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||  |||||||||  | ||||||||| || |||| ||||||||||||||||| ||||||||||    
T  30014424 gagatgaacttaccaaaatatgcctaatacatgggatgtataatg-ggatgtaggaataaagggtgttcatgtaacattttc 30014344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 24204006 - 24204085
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||   ||||| ||| |||||||| ||||||| ||||||||| |||||||||    
T  24204006 gagatgaacttaccaaaatatccctaatacatggagtgtacaat-agggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 27441623 - 27441544
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| ||| |||||||||  ||||||||| | |||| ||| ||||||||||| |||||||||||||| |||||||||    
T  27441623 gagatgaatttaccaaaatatccttaatacataggatgtacaat-agggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 18720069 - 18719997
Alignment:
Q  142 cagtctcctccacctatgaagaactcgacctcgagttctcattatgat-aaagagctttccatgcatgttgact 214  Q
    ||||||||||||||| |||||||||||||| ||| |||| ||| |||| ||||| | |||||||||||||||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattctaattttgataaaagaac-ttccatgcatgttgact 18719997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 26466880 - 26466800
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||| | |||||||||   ||||| |||| ||||||| |||||||||||||| || ||||||||||    
T  26466880 gagatgaacttaccaaaataaccctaatacatggagtgtacaatg-gggtgtaggaataaagggtgtttatgtaacattttc 26466800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 3213478 - 3213401
Alignment:
Q  15 atgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||| ||| |||||||||  ||||||||  |||||| ||||||  ||||||||||||||||||| || ||||||||||    
T  3213478 atgaatttaccaaaatatccttaatacatggggtgtacaatgaga-tgtatgaataaagggtgtttatgtaacattttc 3213401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 31109245 - 31109321
Alignment:
Q  16 tgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||| ||| ||||||||| ||| | |||  ||||||||||| || ||||||| |||||||||||||| ||||||||||    
T  31109245 tgaatttatcaaaatatccctagtgcatggggtgtataatg-ggatgtatgattaaagggtgttcatgtaacattttc 31109321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 8047663 - 8047727
Alignment:
Q  139 catcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccat 203  Q
    |||| ||||||||||||| ||||||||| |||| |||||||| ||| | ||||||| || |||||    
T  8047663 catcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaagaactctccat 8047727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 18252228 - 18252120
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    ||||| |||||| |||||| |||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  18252228 ctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggacaagaga 18252129  T
Q  233 ccaccctcc 241  Q
    |||||||||    
T  18252128 ccaccctcc 18252120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 21845225 - 21845324
Alignment:
Q  139 catcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagaccaccc 238  Q
    |||||||||  ||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||| |||||||    
T  21845225 catcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactcctccaatgaacaagaaaccaccc 21845324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 41334682 - 41334762
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  41334682 gagatgaacttaccaaaatatccctaatacatagggtgtataatga-ggtgtatgaataaagggtgttcatgtaacattttc 41334762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 7617214 - 7617134
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  7617214 gagatgaacttaccaaaatatccctaatacatggggtgtataatg-gagtgtatgaataaagggtgttcatgtaacattttc 7617134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 2614668 - 2614748
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  2614668 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 2614748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 18034063 - 18033983
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| |||||||||| |||||| |||| | ||||| ||||||||||||||||| ||||||||||    
T  18034063 gagatgaacttacaaaaatatccctaatacatagggtgtacaatg-gagtgtaggaataaagggtgttcatgtaacattttc 18033983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 19677629 - 19677674
Alignment:
Q  138 acatcagtctcctccacctatgaagaactcgacctcgagttctcat 183  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  19677629 acatcagtctcctccacctctgaagaactcgaccccgagttctcat 19677674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 22512386 - 22512306
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||   ||||| |||| | ||||| ||||||||||||||||| ||||||||||    
T  22512386 gagatgaacttaccaaaatatccctaatacatggagtgtacaatg-gagtgtaggaataaagggtgttcatgtaacattttc 22512306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 32473413 - 32473493
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| ||||||||| ||||| |||  |||||| ||| ||| ||||||| |||||||||||||| ||||||||||    
T  32473413 gagatgaaattaccaaaatatccctaatgcatgtggtgtacaataagg-tgtatgattaaagggtgttcatgtaacattttc 32473493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 5257076 - 5256997
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| ||| ||||||||| |||||||||  |||||| |||| || |||||||||||| |||||| || |||||||||    
T  5257076 gagatgaaattaccaaaatatccctaatacatggggtgtacaatg-ggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 25915007 - 25915085
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    ||||||||| ||  ||||||| ||||||||||  |||||| ||||||| |||| ||||||||||||||||| |||||||||    
T  25915007 gagatgaacctacaaaaatat-tctaatacattgggtgtacaatgagg-tgtaggaataaagggtgttcatgtaacatttt 25915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 33855068 - 33855142
Alignment:
Q  18 aacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||| |||||| |  |||||||||  |||||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  33855068 aacttaccaaaatgttcctaatacatggggtgtacaatg-gggtgtaggaataaagggtgttcatgtaacattttc 33855142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 33801550 - 33801470
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| |||||||||   ||||| |||| |||||||  |||||||| ||||||| ||||||||||    
T  33801550 gagatgaacttactaaaatatccctaatacatggagtgtacaatg-gggtgtagaaataaaggatgttcatgtaacattttc 33801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 11001063 - 11001211
Alignment:
Q  95 taataaaattaggctgaaatagaaaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaa 192  Q
    |||||||||| ||||||||||  ||| ||| ||||||||  ||||||||||||||||||||||| |||||||||||||| | | |||||||| |||||||    
T  11001063 taataaaattgggctgaaataataaaatactaaggaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaa 11001162  T
Q  193 gagctttccatgcatgttgactactccaatggacaagagaccaccctcc 241  Q
    |||||| ||||||||||| ||| |||||||| | |||||| || |||||    
T  11001163 gagcttcccatgcatgttaactcctccaatgaaaaagagatcatcctcc 11001211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 4303217 - 4303119
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagag 231  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| |||||||||| |||| |||||||| |||||||    
T  4303217 ctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 4303119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 1369614 - 1369513
Alignment:
Q  143 agtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggac-aagagaccaccctcc 241  Q
    |||||||||||||| |||||||||||| | |||||||| ||| ||||||||||||| ||||| ||||||||| |||||||| || ||| |||||||||||    
T  1369614 agtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaaagcgaccaccctcc 1369515  T
Q  242 ac 243  Q
    ||    
T  1369514 ac 1369513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 1786483 - 1786420
Alignment:
Q  134 tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagct 197  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  1786483 tcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaagagct 1786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 8915450 - 8915551
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    ||||||||||||||||||||| || ||||||||| |||| ||| |||||||| | ||||| ||| | ||||||||||||||| |||| ||| ||||||||    
T  8915450 ctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctccgatgaacaagaga 8915548  T
Q  233 cca 235  Q
    |||    
T  8915549 cca 8915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 24001031 - 24001111
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  24001031 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 24001111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 35069802 - 35069722
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||| |||||| |||||||| |||||||| ||||||||||    
T  35069802 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatga-ggtgtaggaataaagagtgttcatgtaacattttc 35069722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 42538450 - 42538530
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  42538450 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 42538530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 1217489 - 1217595
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||| | || |||||||||| ||| ||||||||| |  | |||||||  ||||||||    
T  1217489 ctcctgcatcagtctcctccacctttgaagaactcgacc-cgagttcacgttttgataaagagattt-catgcatgtcgtgtcctccaattaacaagaga 1217586  T
Q  233 ccaccctcc 241  Q
    |||||||||    
T  1217587 ccaccctcc 1217595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 41861757 - 41861675
Alignment:
Q  12 gagatgaacttaacaaaatatctcta--atacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||| |||||| |||||||||||||  ||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  41861757 gagataaacttaccaaaatatctctataatacatagggtgtataatt-gggtgtatgaataaagggtgttcatgtaacattttc 41861675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 5810943 - 5811023
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||| ||| |||||| |||| ||||||| |||||||||||| |||| ||||||||||    
T  5810943 gagatgaacttatcaaaatatccctaatatatagggtgtacaatg-gggtgtaggaataaagggtggtcatgtaacattttc 5811023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 44326259 - 44326180
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||| || ||||||| |||| || ||||||||||||||||||| || |||||||||    
T  44326259 gagatgaacttaccaaaatatccctaatatatgaggtgtacaatg-ggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 13883012 - 13883121
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgc--atgttgactactccaatggacaaga 230  Q
    ||||| |||||||||| ||||||| | |||||||||||| |||||||||||| | |||||||| ||  |||||  |||||| || |||||||  ||||||    
T  13883012 ctcctgcatcagtctcgtccacctctaaagaactcgacc-cgagttctcattctaataaagagattctcatgcatatgttggctcctccaataaacaaga 13883110  T
Q  231 gaccaccctcc 241  Q
    |||||||||||    
T  13883111 gaccaccctcc 13883121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 5015476 - 5015396
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||||||||| ||||||| |||| | |||||  ||||||| |||||||| ||||||||||    
T  5015476 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatg-gagtgtagaaataaagagtgttcatgtaacattttc 5015396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 5194250 - 5194330
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||||||  ||| ||||| |||||| ||||||| |||||||||||| ||||||||| ||||||||||    
T  5194250 gagatgaatttatcaaaatatccttaaaacatagggtgtacaatgagg-tgtatgaataaatggtgttcatgtaacattttc 5194330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 42972933 - 42972853
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||||||||| ||||||| |||| | ||||| ||||||||| ||||||  ||||||||||    
T  42972933 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatg-gagtgtaggaataaaggatgttcaggtaacattttc 42972853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 11228528 - 11228423
Alignment:
Q  134 tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagac 233  Q
    |||||||||||||| |||| ||| | ||||||| | || |||||||||||| | ||||||| ||| ||||||||| ||||| ||  |||| |||||||||    
T  11228528 tcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgatgactcctataatgaacaagagac 11228430  T
Q  234 caccctc 240  Q
     ||||||    
T  11228429 taccctc 11228423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 9216382 - 9216303
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||||||||| |||  |||||| ||| ||| | || ||||||||||||||||| ||||||||||    
T  9216382 gagatgaacttaccaaaatatctctaatgcatg-ggtgtacaat-aggatataggaataaagggtgttcatgtaacattttc 9216303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 43317524 - 43317444
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| ||||||||| ||||  |||| | |||| ||||||| |||||||||||| ||||||||| ||||||||||    
T  43317524 gagatgaatttatcaaaatatccctaaagcataggatgtacaatgagg-tgtatgaataaatggtgttcatgtaacattttc 43317444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 10573830 - 10573751
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| ||| ||||||||  |||||||||  |||||| ||| ||| ||||||||||||||||||| || |||||||||    
T  10573830 gagatgaatttaccaaaatattcctaatacatggggtgtacaat-aggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 43343643 - 43343722
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||| ||||||||  |||||| | ||||||| |||||||||    
T  43343643 gagatgaacttatcaaaatatccctaatacatggggtgtacaat-agggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 44416953 - 44417032
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||| ||||||||  |||||| | ||||||| |||||||||    
T  44416953 gagatgaacttatcaaaatatccctaatacatggggtgtacaat-agggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 24280615 - 24280695
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||||| |||| | |||  | |||| ||| |||||||||||||||||||||||||  ||||||||||    
T  24280615 gagatgaatttaccaaaatatttctagtgcatgggatgtagaat-agggtgtatgaataaagggtgttcacgtaacattttc 24280695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 40237000 - 40236920
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| ||| ||||||| |||||||||||||| ||||||||||    
T  40237000 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaat-aggatgtatgattaaagggtgttcatgtaacattttc 40236920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 4638218 - 4638297
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| |||||||||  ||||| ||  |||||| |||  | ||||||||||||| ||||||||| |||||||||    
T  4638218 gagatgaacttaccaaaatatccataatatatggggtgtacaatt-gagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 22716416 - 22716314
Alignment:
Q  139 catcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagaccaccc 238  Q
    ||||||||||||||| || | |||||||||||| |||||||||||| ||||||||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  22716416 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagaccaccc 22716317  T
Q  239 tcc 241  Q
    |||    
T  22716316 tcc 22716314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 22988801 - 22988903
Alignment:
Q  139 catcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagaccaccc 238  Q
    ||||||||||||||| || | |||||||||||| |||||||||||| ||||||||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  22988801 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagaccaccc 22988900  T
Q  239 tcc 241  Q
    |||    
T  22988901 tcc 22988903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 10494728 - 10494626
Alignment:
Q  137 tacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagaccac 236  Q
    ||||||||||| ||| || | |||||||||||||||| |||||| ||  ||||||| ||||| |||||||||| |||| |||||||| ||||||||||||    
T  10494728 tacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaagagaccac 10494629  T
Q  237 cct 239  Q
    |||    
T  10494628 cct 10494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 1771285 - 1771365
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| |||||||||||||||||||  |||||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  1771285 gagatgaacttatcaaaatatctctaatacatggggtgtacaatg-gggtgtaggaataaagggtgttcatgtaacattttc 1771365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 7635098 - 7634998
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    |||| |||||||||||||||| || |||||||||||||| | | |||||||| | ||||| ||||  ||||||||||||||| |||| ||| ||||||||    
T  7635098 ctcccacatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagaga 7634999  T
Q  233 c 233  Q
    |    
T  7634998 c 7634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 12497036 - 12496957
Alignment:
Q  13 agatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| |||||||||||||||||||  | |||| |||| | ||||| ||||||||||||||||||||||||||||    
T  12497036 agatgaacttaccaaaatatctctaatacatgggatgtacaatg-gagtgtaggaataaagggtgttcatataacattttc 12496957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 21687087 - 21687007
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  ||||||| ||||||||||||| ||||||||| |||||||  |||||||| ||||||| ||||||||||    
T  21687087 gagatgaacttactaaaatatttctaatacataagatgtataatg-gggtgtaaaaataaaggatgttcatgtaacattttc 21687007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 25051774 - 25051694
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| ||||||| |||||||| |||||||| | ||||||||    
T  25051774 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-gggtgtaggaataaagtgtgttcatgtgacattttc 25051694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 27316732 - 27316812
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| |||||||||  ||||||||  |||||||||||| |||||| ||||||||||||||| | ||||||||||    
T  27316732 gagatgaacttaccaaaatatccttaatacatggggtgtataatga-ggtgtaggaataaagggtgttcgtttaacattttc 27316812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 41878487 - 41878407
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||  ||| |||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  41878487 gagatgaacttatcaaaatatccctaatggatagggtgtacaatgagg-tgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 6659658 - 6659745
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaa 221  Q
    ||||||||||||||||||| |||| |||||||||||||| | | |||||||  ||||||||||||| ||||| || |||||| ||||||    
T  6659658 ctcctacatcagtctcctctacctctgaagaactcgacc-caaattctcatcttgataaagagcttcccatgaatattgactcctccaa 6659745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 27550389 - 27550310
Alignment:
Q  13 agatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| ||||||||| ||||||||| ||||||| |||| | |||||  |||||||||||||||| ||||||||||    
T  27550389 agatgaacttaccaaaatatccctaatacatgaggtgtacaatg-gagtgtagaaataaagggtgttcatgtaacattttc 27550310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 712041 - 711961
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||||||  |||| |||| |||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  712041 gagatgaatttaccaaaatatccttaatgcatagggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 711961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 27864645 - 27864565
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||| || |||||||||||| |||||| || ||||||||||    
T  27864645 gagatgaacttaccaaaatatccctaatacatggggtgtacaatg-ggatgtatgaataaatggtgtttatgtaacattttc 27864565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 55966365 - 55966445
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  | |||| |||| || ||||||||||||||||||| || ||||||||||    
T  55966365 gagatgaacttaccaaaatatccctaatacatgggatgtacaatg-ggatgtatgaataaagggtgtttatgtaacattttc 55966445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 13085423 - 13085483
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaag 193  Q
    |||||||||||||||| |||| || |||||||||||||| |||||||||||  ||||||||    
T  13085423 ctcctacatcagtctcttccatctctgaagaactcgaccccgagttctcatcttgataaag 13085483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 43514705 - 43514784
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||| | ||||||||| | ||||| |||| | ||||| ||||||||||||||||| |||||||||    
T  43514705 gagatgaacttaccaaaataaccctaatacatgaagtgtacaatg-gagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 23036061 - 23035981
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| |||||| ||| |||||| ||| |||||||| |||||||||  |||||| ||||||||||    
T  23036061 gagatgaacttacaaaaatatccctaatatatagggtgtacaat-agggtgtaggaataaaggaggttcatgtaacattttc 23035981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 28982841 - 28982921
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||| ||  | |||| ||| ||||||||  |||||||||||||||| ||||||||||    
T  28982841 gagatgaacttaccaaaatatccctaatatatgggatgtacaat-agggtgtagaaataaagggtgttcatgtaacattttc 28982921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 28988554 - 28988474
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||| | |||  |||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  28988554 gagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgagg-tgtatgaataaagggtgttcatgtaacattttc 28988474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 33703222 - 33703142
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||| | | ||||  |||||||||||||||| ||||||||||    
T  33703222 gagatgaacttaccaaaatatccctaatacatggggtgtacaat-aagatgtagaaataaagggtgttcatgtaacattttc 33703142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 39631182 - 39631102
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaat-aaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||| |||||| |||| |||||| |||||| || ||||||    
T  39631182 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatga-ggtgtaggaataaaagggggttcatgtatcatttt 39631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 27893861 - 27893940
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| ||| ||||||||| |||||||||  |||||| |||| || |||||||||||| |||||| || |||||||||    
T  27893861 gagatgaaattaccaaaatatccctaatacatggggtgtacaatg-ggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 43735823 - 43735744
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| |||||||||||||||||||    |||||||||| | |||| ||||||||| ||||||| ||| |||||    
T  43735823 gagatgaacttatcaaaatatctctaatacatggaatgtataatga-gatgtaggaataaaggatgttcatgtaatatttt 43735744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 48463469 - 48463554
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttcttaat 98  Q
    |||||||||||| ||||||||| |||||||||  | |||| |||||   |||||||||||| |||||| || |||||||||| ||||    
T  48463469 gagatgaacttaccaaaatatccctaatacatgggatgtacaatga-aatgtatgaataaatggtgtttatgtaacattttcctaat 48463554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 17619171 - 17619251
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||||||  |||| |||  |||||| ||| ||||||||||| |||| ||||||||| ||||||||||    
T  17619171 gagatgaatttaccaaaatatccttaatgcatggggtgtacaat-agggtgtatgattaaaaggtgttcatgtaacattttc 17619251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 35017813 - 35017734
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||| |||||  |||||| ||||||  | || ||||||||||||||||| ||||||||||    
T  35017813 gagatgaacttaccaaaatatcccta-tacatggggtgtacaatgaga-tataggaataaagggtgttcatgtaacattttc 35017734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 43949820 - 43949900
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaat-aaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||||| |||| | |||| ||||||||||||| || ||||||    
T  43949820 gagatgaacttaccaaaatatccctaatacatggggtgtacaatga-ggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 960890 - 960969
Alignment:
Q  13 agatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||| ||| |||||| || |||||  ||| |||||| ||| || |||||||| |||||||||||||| ||||||||||    
T  960890 agatgaatttaccaaaatgtccctaatgtatagggtgtacaat-agagtgtatgattaaagggtgttcatgtaacattttc 960969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 49229727 - 49229763
Alignment:
Q  57 agggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  49229727 agggtgtatgattaaaggatgttcatataacattttc 49229763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 35682014 - 35681910
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    ||||| |||||||||||||||||| |||||||||||||| | ||||||| || ||||||||||||||| ||||||||||||| || ||||| ||||||||    
T  35682014 ctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactccttcaatgaacaagaga 35681915  T
Q  233 ccacc 237  Q
    |||||    
T  35681914 ccacc 35681910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 280294 - 280381
Alignment:
Q  136 ctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatg 223  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||  |||||||||||| | ||||||||    
T  280294 ctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatg 280381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 31636095 - 31635997
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagag 231  Q
    |||||||||||||||||||||||| ||||||||||||   ||||||||||||  ||||||||| || ||||||||||||||| |||||||| |||||||    
T  31636095 ctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaacaagag 31635997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 32162204 - 32162351
Alignment:
Q  95 taataaaattaggctgaaatagaaaattacaaaggaaa--ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaa 192  Q
    ||||||||||  |||||||||  ||| | | |||||||  ||| ||||| ||||||||||| || |||| ||||| |||| ||||||||||| |||||||    
T  32162204 taataaaattgagctgaaataataaaattctaaggaaatcctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaa 32162303  T
Q  193 gagctttccatgcatgttgactactccaatggacaagagaccaccctcc 241  Q
    |||||| ||||||||||||||| ||| |||| |||||||||||||||||    
T  32162304 gagcttcccatgcatgttgact-ctctaatgaacaagagaccaccctcc 32162351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 27952654 - 27952719
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctt 198  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||    
T  27952654 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagctt 27952719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 33053263 - 33053121
Alignment:
Q  100 aaattaggctgaaatagaaaattacaaaggaaactc--ctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagct 197  Q
    ||||||||||||||||  ||| ||| |||||||| |  ||||||||||||||||||||| |||||||||||||| || ||||| ||| | ||||||||||    
T  33053263 aaattaggctgaaataataaaatactaaggaaacccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagct 33053165  T
Q  198 ttccatgcatgttgactactccaatggacaagagaccaccctcc 241  Q
    |  ||| ||||| |||| ||| |||  |||||||||||||||||    
T  33053164 tctcattcatgtcgactcctctaataaacaagagaccaccctcc 33053121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 2165702 - 2165624
Alignment:
Q  117 aaaattacaaaggaaactc--ctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaag 193  Q
    |||||||| ||||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||    
T  2165702 aaaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 2165624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 1750495 - 1750415
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| |||||||||| |||||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  1750495 gagatgaacttacaaaaatatccctaatacatagggtgtacaatg-gggtgtaggaataaagggtgttcatgtaacattttc 1750415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 19047238 - 19047157
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttct 94  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| |  |||| ||||||||||||||||| |||||||||||    
T  19047238 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-gaatgtaggaataaagggtgttcatgtaacattttct 19047157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 12302272 - 12302352
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| |||||||||| |||||| |||| |||||||  |||||||||||||||| ||||||||||    
T  12302272 gagatgaacttacaaaaatatccctaatacatagggtgtacaatg-gggtgtagaaataaagggtgttcatgtaacattttc 12302352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 16096828 - 16096748
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||| |||| | ||||||||| |||||||||  ||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  16096828 gagattaactcaccaaaatatccctaatacatggggtgtataatg-gggtgtaggaataaagggtgttcatgtaacattttc 16096748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 43490420 - 43490499
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| ||||||||||  ||||| |||| || |||| ||||||||||||||||| |||||||||    
T  43490420 gagatgaacttaccaaaatatccctaatacatagagtgtacaatg-ggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 36648700 - 36648576
Alignment:
Q  118 aaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgat-aaagagctttccatgcatgttgact 214  Q
    ||||||| ||||||||  |||||||| ||||||||||| ||||||||||||||||  | ||||||  || |||| |||| || ||||||||||| |||||    
T  36648700 aaattactaaggaaaccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgc-ttccatgcatgatgact 36648602  T
Q  215 actccaatggacaagagaccaccctc 240  Q
      ||||||| | ||||||||||||||    
T  36648601 cttccaatgaataagagaccaccctc 36648576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 43335782 - 43335862
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  | |||| ||||| |||||| ||||||| | ||||||||||||||||||    
T  43335782 gagatgaacttaccaaaatatccctaatacatgggatgtacaatga-ggtgtaggaataaatgatgttcatataacattttc 43335862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 22011192 - 22011087
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    ||||| ||||| |||||||||||| | ||||||||||||  ||||||||||| | |||||||  ||  |||| ||||||||| || | ||| |||||| |    
T  22011192 ctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaacaagata 22011093  T
Q  233 ccaccc 238  Q
    ||||||    
T  22011092 ccaccc 22011087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 30838713 - 30838633
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||| | | ||||  |||||||||||||||| ||||||||||    
T  30838713 gagatgaacttaccaaaatatccctaatacatggggtgtacaat-aagatgtagaaataaagggtgttcatgtaacattttc 30838633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 43114638 - 43114558
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  43114638 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 43114558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 11825673 - 11825752
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| ||||||||||| |||||||||||||| |||||||||    
T  11825673 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaat-agggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 41281993 - 41282072
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| ||||||||||| |||||||||||||| |||||||||    
T  41281993 gagatgaaattatcaaaatgtccctaatgcatggggtgtacaat-agggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 4299483 - 4299518
Alignment:
Q  57 agggtgtatgaataaagggtgttcatataacatttt 92  Q
    ||||||||||| ||||||||||||||||||||||||    
T  4299483 agggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 14285757 - 14285691
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgtt 79  Q
    |||||||| ||| |||||||||| ||||| ||| |||||| ||| ||||||||||| |||||||||||    
T  14285757 gagatgaatttaccaaaatatctttaatatatagggtgtacaat-agggtgtatgattaaagggtgtt 14285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 23457462 - 23457389
Alignment:
Q  117 aaaattacaaaggaaac-tcctacatcagtctcctccacctatgaagaactc-gacctcgagttctcattatgat 189  Q
    |||||||| ||| |||| ||||||||||||| ||||||||| |||||||||| |||| |||||||||||| ||||    
T  23457462 aaaattactaagaaaacctcctacatcagtcgcctccacctctgaagaactctgacc-cgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 16804049 - 16803969
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  | |||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  16804049 gagatgaaattatcaaaatgtccctaatgcatgggatgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 16803969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 16843331 - 16843251
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  | |||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  16843331 gagatgaaattatcaaaatgtccctaatgcatgggatgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 16843251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 18491762 - 18491706
Alignment:
Q  36 taatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||| ||| ||||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  18491762 taatgcatgaggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 18491706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 966897 - 966933
Alignment:
Q  57 agggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  966897 agggtgtatgattaaagggtgttcatgtaacattttc 966933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 34817829 - 34817876
Alignment:
Q  46 ggtgtataatgagggtgtatgaataaagggtgttcatataacattttct 94  Q
    |||||| ||||||| ||| |||||||||||||||||| |||||||||||    
T  34817829 ggtgtacaatgagg-tgtgtgaataaagggtgttcatgtaacattttct 34817876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 23573341 - 23573240
Alignment:
Q  136 ctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagacca 235  Q
    |||||| |||||||||||||| ||||||||||||||  ||||| ||||| ||||||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  23573341 ctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaaaagacca 23573242  T
Q  236 cc 237  Q
    ||    
T  23573241 cc 23573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 2689014 - 2688874
Alignment:
Q  98 taaaattaggctgaaatagaaaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagag 195  Q
    |||||||||||||||||| |||  ||| || |||||  |||||||| ||||||||||||||||||||||||||| | |||||||||||| | ||  ||||    
T  2689014 taaaattaggctgaaataaaaa--tactaaagaaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agag 2688919  T
Q  196 ctttccatgcatgttgactactccaatggacaagagaccaccctc 240  Q
     || ||||||||||||||| |||||||| ||| |||| |||||||    
T  2688918 tttcccatgcatgttgactcctccaatgaacatgagatcaccctc 2688874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 11582847 - 11582767
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  11582847 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 11582767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 36743502 - 36743582
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  36743502 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 36743582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 42699338 - 42699259
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    ||||||||||||  ||||||||  |||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||    
T  42699338 gagatgaacttacaaaaatatccataatacataaggtgtacaatg-gggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 45397397 - 45397314
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttctta 96  Q
    ||||||||||||  |||||||| |||||||||| |||||| |||| ||||||| ||||||||||||||||  |||||||||||||    
T  45397397 gagatgaacttacaaaaatatccctaatacatagggtgtagaatg-gggtgtaggaataaagggtgttcacgtaacattttctta 45397314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 22922179 - 22922229
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcat 183  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  22922179 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcat 22922229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 29705443 - 29705363
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||| |||||||  |||||||||||||||| ||||||||||    
T  29705443 gagatgaacttatcaaaatatccctaatacatggggtgtacaatg-gggtgtagaaataaagggtgttcatgtaacattttc 29705363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 20148841 - 20148762
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||| || ||||||| |||| || ||||||||||||||||||| || |||||||||    
T  20148841 gagatgaacttaccaaaatatccctaatatatgaggtgtacaatg-ggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 26125716 - 26125637
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| |  ||||||||||||||||||| || |||||||||    
T  26125716 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-gaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 26377832 - 26377776
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgat 189  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||    
T  26377832 ctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 30660762 - 30660841
Alignment:
Q  13 agatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||| || ||||  |||||||||||||||| ||||||||||    
T  30660762 agatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtagaaataaagggtgttcatgtaacattttc 30660841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 30912581 - 30912660
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||| | ||||||||| | ||||| |||| ||||||| ||||||||||||||||| |||||||||    
T  30912581 gagatgaacttaccaaaatacccctaatacatgaagtgtacaatg-gggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 42295276 - 42295197
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||   ||||| ||||||| |||| ||||||||||||||||| |||||||||    
T  42295276 gagatgaacttaccaaaatatccctaatacatggagtgtacaatgagg-tgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 2165982 - 2166062
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| |||||||||||||||||||  ||| || |||| ||||||| ||||||| ||||||||| ||| ||||||    
T  2165982 gagatgaacttaccaaaatatctctaatacatggggtatacaatg-gggtgtaggaataaatggtgttcatgtaatattttc 2166062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 42197454 - 42197534
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||||||||||  ||||  |||| ||||||| ||||||| ||||||||| ||||||||||    
T  42197454 gagatgaacttaccaaaatatccctaatacatagtgtgtgcaatg-gggtgtaggaataaatggtgttcatgtaacattttc 42197534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 24577811 - 24577915
Alignment:
Q  137 tacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagagaccac 236  Q
    |||||||||||||||||| | ||||||| ||||||| |||||||| || ||||| ||| |||  | ||||| || ||| |||||||  |||||||||||     
T  24577811 tacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagagaccat 24577910  T
Q  237 cctcc 241  Q
    |||||    
T  24577911 cctcc 24577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 29800969 - 29801048
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||| || |||||||||||| |||||| || |||||||||    
T  29800969 gagatgaacttaccaaaatatccctaatacatggggtgtacaatg-ggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 22512377 - 22512448
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatg 204  Q
    ||||| |||||||||||||||||| | |||||||||||| |||||||| ||| ||||||  ||||| |||||    
T  22512377 ctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataagaagcttcccatg 22512448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 2547077 - 2546997
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| ||||||||| ||||||| |||| | |||||  ||||||| |||||||| ||||||||||    
T  2547077 gagatgaacttactaaaatatccctaatacatgaggtgtacaatg-gagtgtagaaataaagagtgttcatgtaacattttc 2546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 35181597 - 35181517
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  35181597 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 35181517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 2188719 - 2188783
Alignment:
Q  118 aaattacaaaggaaac--tcctacatcagtctcctccacctatgaagaactcgacctcgagttct 180  Q
    ||||||| ||||||||  |||||| | ||||||||||| ||||||||||||||||  ||||||||    
T  2188719 aaattactaaggaaaccttcctacgtgagtctcctccatctatgaagaactcgactccgagttct 2188783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 5754984 - 5754904
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||| ||  | |||| |||| || |||| ||||||| ||||||||| ||||||||||    
T  5754984 gagatgaacttaccaaaatatccctaatatatgggatgtacaatg-ggatgtaggaataaaaggtgttcatgtaacattttc 5754904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 34304869 - 34304789
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| ||||||||||| |||||| ||||||| ||||||||||    
T  34304869 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaat-agggtgtatgattaaaggatgttcatgtaacattttc 34304789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 19386633 - 19386669
Alignment:
Q  57 agggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  19386633 agggtgtatgattaaagggtgttcatgtaacattttc 19386669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 33630012 - 33630091
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| |||  ||||| || ||||| |||| |||||| ||||||| ||||||| |||||||||||| | |||||||||    
T  33630012 gagatgaaattactaaaatgtccctaatgcatagggtgtacaatgagg-tgtatgattaaagggtgttcgtgtaacatttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 365880 - 365987
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||  ||||||| ||| ||||    
T  365880 ctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagc-ttccatgtatgttgactcttccaatgaacaggaga 365978  T
Q  233 ccaccctcc 241  Q
    |||||||||    
T  365979 ccaccctcc 365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 27748644 - 27748565
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  27748644 gagatgaacttaccaaaatatccctaatacataaggtgtataatga-ggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 4190284 - 4190364
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  4190284 gagatgaatttaccaaaatatctctaatacataaggtgtacaat-agggtgtatgattaaagggtgttcatgtaacattttc 4190364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 25413762 - 25413682
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  25413762 gagatgaacttacaaaaatatccctaatacataaggtgtacaatg-gggtgtaggaataaagggtgttcatgtaacattttc 25413682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 36150211 - 36150131
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| || ||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  36150211 gagatgaacttaccaaaatatccctgatacatagggtgtataatg-gggtgtatgaataaagggtattcatgtaacattttc 36150131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 54246167 - 54246247
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  ||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  54246167 gagatgaacttacaaaaatatctctaatacatagggtgtacaatg-gggtgtaggaataaagggtgttcatgtaacattttc 54246247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 40480830 - 40480746
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttcttaa 97  Q
    |||||||||||| ||||||||| |||||||||| | |||| |||| |||  |||||||||||||||||||| ||||||||||||||    
T  40480830 gagatgaacttaccaaaatatccctaatacataggatgtacaatg-gggcatatgaataaagggtgttcatgtaacattttcttaa 40480746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 42100769 - 42100689
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||||| |||||| ||||||||||||||||| ||||||||||    
T  42100769 gagatgaacttaccaaaatatccctaatacatggggtgtacaatga-ggtgtaggaataaagggtgttcatgtaacattttc 42100689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 47191045 - 47191124
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| |||||||||||||||||||  |||||| ||||| |||||| ||||||||||||||||| ||||||||||    
T  47191045 gagatgaacttatcaaaatatctctaatacat-gggtgtacaatga-ggtgtaggaataaagggtgttcatgtaacattttc 47191124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 54237177 - 54237097
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| ||||||||||||||||| ||||||||||    
T  54237177 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-ggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 42394438 - 42394519
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttct 94  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| |  |||| ||||||||||||||||| |||||||||||    
T  42394438 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-gaatgtaggaataaagggtgttcatgtaacattttct 42394519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 24688421 - 24688501
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| | |||||  |||||||||||||||| ||||||||||    
T  24688421 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-gagtgtagaaataaagggtgttcatgtaacattttc 24688501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 45126947 - 45127027
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||| || ||||||||||||||||||| || ||||||||||    
T  45126947 gagatgaacttaccaaaatatccctaatacatggggtgtacaatg-ggatgtatgaataaagggtgtttatgtaacattttc 45127027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 46941134 - 46941054
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| ||||| | |||| ||||||||||||||||| ||||||||||    
T  46941134 gagatgaacttaccaaaatatccctaatacatggggtgtacaatga-gatgtaggaataaagggtgttcatgtaacattttc 46941054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 53581877 - 53581956
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||||||| ||||||||| |||||||||| | |||| |||| | |||||||||||||| |||||||| |||||||||    
T  53581877 gagatgaacttatcaaaatatccctaatacataggatgtacaatg-gagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 3064068 - 3064158
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgca-tgttgactactccaat 222  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||| || |  | ||||||| ||||| || |||||||| |||||||    
T  3064068 ctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctcgttctagtgaagagctatccattcattgttgactcctccaat 3064158  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 40808946 - 40808866
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||| ||||||| ||||||| |||||| || ||||||||||    
T  40808946 gagatgaacttaccaaaatatccctaatacatggggtgtacaatg-gggtgtaggaataaatggtgttgatgtaacattttc 40808866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 8536660 - 8536768
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    |||||||||||| ||| ||||||| | |||||||||||  |||||||| ||| ||||||| || ||  |||  |||||||||  ||||||| ||||||||    
T  8536660 ctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaagtttctcatatatgttgactcttccaatgaacaagaga 8536759  T
Q  233 ccaccctcc 241  Q
     ||||||||    
T  8536760 tcaccctcc 8536768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 29558253 - 29558330
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatt 90  Q
    |||||||| ||| ||| ||||  |||||| ||| |||||| ||||||  ||||||||||||||||||||||||||||||    
T  29558253 gagatgaatttaccaatatattcctaatatatagggtgtacaatgaga-tgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 53273703 - 53273783
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||||||  | |||| ||||| ||| || ||||||| | ||||||||||||||||||    
T  53273703 gagatgaacttaccaaaatatccctaatacatgggatgtacaatga-ggtataggaataaatgatgttcatataacattttc 53273783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 1078307 - 1078229
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    ||||||||| ||  |||||||| ||||||||| ||||||| ||||||| || | ||||||||||||||||| |||||||||    
T  1078307 gagatgaacctacaaaaatatc-ctaatacattaggtgtacaatgagg-tgcaggaataaagggtgttcatgtaacatttt 1078229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 2473000 - 2473084
Alignment:
Q  147 tcctccacctatgaagaactcgacctcgagttctcattatgataaagag--ctttccatgcatgttgactactccaatggacaag 229  Q
    |||||||| | | |||||||||||| |||||||||||| ||||||| |   |||  |||||||||||||| |||||||| |||||    
T  2473000 tcctccacttttaaagaactcgaccccgagttctcattctgataaaaaaaacttctcatgcatgttgacttctccaatgaacaag 2473084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 9434205 - 9434125
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||| ||| |||||| || ||||| |||  |||||| ||| || |||||||| |||||||||||||| ||||||||||    
T  9434205 gagatgaaattaccaaaatgtccctaatgcatggggtgtacaat-agagtgtatgattaaagggtgttcatgtaacattttc 9434125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 10459 - 10351
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgcatgttgactactccaatggacaagaga 232  Q
    |||||||||||||||| ||||||| | | ||| | |||| | |||||||||||||||||||||||| ||||| || |||||| |||||||| ||||||||    
T  10459 ctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaacaagaga 10360  T
Q  233 ccaccctcc 241  Q
    | |||||||    
T  10359 caaccctcc 10351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 49122 - 49041
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgat-aaagagctttccatgcatgttgact 214  Q
    |||||||||||||||||||||||| |||||||||| ||| |||||||| ||| |||| ||||| | |||||||||||||||||    
T  49122 ctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaac-ttccatgcatgttgact 49041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 37523 - 37443
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgat-aaagagctttccatgcatgttgact 214  Q
    |||||||||||||||||||||||| |||||||||||||| | | |||| ||| |||| ||||||| |||||||||||||||||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcgacc-caaattcttattctgataaaagagc-ttccatgcatgttgact 37443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 766 - 686
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||| ||||||||||    
T  766 gagatgaacttaccaaaatatccctaatacatgaggtgtacaatga-ggtgtaggaataaagggtgttcatgtaacattttc 686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 23441 - 23520
Alignment:
Q  13 agatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||| |||||||||||||||||||  | |||| |||| | ||||| ||||||||||||||||||||||||||||    
T  23441 agatgaacttaccaaaatatctctaatacatgggatgtacaatg-gagtgtaggaataaagggtgttcatataacattttc 23520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 45945 - 46005
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaag 193  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||    
T  45945 ctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcatcttgataaag 46005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 112736 - 112655
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttct 94  Q
    |||||||||||| ||||||||| |||||||||| |||||| |||| |  |||| ||||||||||||||||| |||||||||||    
T  112736 gagatgaacttaccaaaatatccctaatacatagggtgtacaatg-gaatgtaggaataaagggtgttcatgtaacattttct 112655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 11332 - 11252
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    |||||||||||| ||||||||| |||||| ||  |||||| |||| |||||||||||||||| |||||||| | ||||||||    
T  11332 gagatgaacttaccaaaatatccctaatatatggggtgtacaatg-gggtgtatgaataaagtgtgttcatgtgacattttc 11252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 14207 - 14287
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| |||||||||| | |||| |||| |||||||  |||||||||||||||| ||||||||||    
T  14207 gagatgaacttacaaaaatatccctaatacataggatgtacaatg-gggtgtagaaataaagggtgttcatgtaacattttc 14287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 24535 - 24615
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacattttc 93  Q
    ||||||||||||  |||||||| |||||||||| | |||| |||| |||||||  |||||||||||||||| ||||||||||    
T  24535 gagatgaacttacaaaaatatccctaatacataggatgtacaatg-gggtgtagaaataaagggtgttcatgtaacattttc 24615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 45738 - 45817
Alignment:
Q  12 gagatgaacttaacaaaatatctctaatacataaggtgtataatgagggtgtatgaataaagggtgttcatataacatttt 92  Q
    |||||||| ||| |||||||||  ||||||||| | |||| ||| ||||||||||| |||||||||||||| |||||||||    
T  45738 gagatgaatttaccaaaatatccttaatacataggatgtacaat-agggtgtatgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 145542 - 145442
Alignment:
Q  133 ctcctacatcagtctcctccacctatgaagaactcgacctcgagttctcattatgataaagagctttccatgca-tgttgactactccaatggacaagag 231  Q
    ||||||||||||||||||||||||  |||||||| |||| |||||| | ||| |||||||||| | ||| | || |||||||| || ||||| |||||||    
T  145542 ctcctacatcagtctcctccacctcagaagaacttgacc-cgagttattattctgataaagagttgtccgttcattgttgactccttcaatgaacaagag 145444  T
Q  232 ac 233  Q
    ||    
T  145443 ac 145442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 15758 - 15704
Alignment:
Q  188 ataaagagctttccatgcatgttgactactccaatggacaagagaccaccctcca 242  Q
    ||||||| |||  |||||||||||||| |||||||| ||| ||||||||||||||    
T  15758 ataaagaacttctcatgcatgttgactcctccaatgaacaggagaccaccctcca 15704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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