View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16332_low_4 (Length: 402)
Name: NF16332_low_4
Description: NF16332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16332_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 46461745 - 46461375
Alignment:
| Q |
19 |
gttcaacgaaataacaccaataactggtggacaaccttcagggtgcctactaatcatttgtctttgatgaaattattagttattcatgtcattttgttct |
118 |
Q |
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| T |
46461745 |
gttcaacgaaataacaccaataactggtggacaaccttcagggtgcctactaatcatttgtctttgatgaaattattagttattcatgtcattttgttct |
46461646 |
T |
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| Q |
119 |
tgacgatacttatctcattttgggctgaatttgcaagttgtaaaattctgtttgcagacaaacattggccagtgcacttagcattttacaagagaaactt |
218 |
Q |
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| T |
46461645 |
tgatgatacttatctcattttgggctgaatttgcaagttgtaaaattctgtttgcagacaaacattggccagtgcacttagcattttacaagagaaactt |
46461546 |
T |
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| Q |
219 |
cgacaggatcaaaatcagaaccagcaacttccagggtttacacaagtaatcatgaacataacttttttcttgatttgcgtgttacccgcatataaattca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46461545 |
cgacaggatcaaaatcagaaccagcaacttccagggtttacacaagtaatcatgaacataacttttttcttgatttgcgtgttacccgcatataaattca |
46461446 |
T |
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| Q |
319 |
caacgatctgctgtatttaccatcttttgttttgaatcaggccatgcacagtggcatgagtgcaatgatga |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46461445 |
caacgatctgctgtatttaccatcttttgttttgaatcaggccatgcacagtggcatgagtgcaatgatga |
46461375 |
T |
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