View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16332_low_5 (Length: 368)
Name: NF16332_low_5
Description: NF16332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16332_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 275887 - 276033
Alignment:
| Q |
40 |
tttatgacaaatcaattcaatctagcaccgttttattagaccaaaataactcagctcataccgtactcgtgacatgtcaagacaggtggaaatacggccg |
139 |
Q |
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| T |
275887 |
tttatgacaaatcaattcaatctagcaccgttttattagaccaaaataactcagctcataccgtactcgtgacatgtcaagacaggtggaaatacggccg |
275986 |
T |
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| Q |
140 |
gacaagcctaattttgtttaaagatctagttaaccagtgtctttttt |
186 |
Q |
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| T |
275987 |
gacaagcctaattttgtttaaagatctagttaaccagtgtctttttt |
276033 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 31932792 - 31932860
Alignment:
| Q |
282 |
aataaacatatatttcttaagaggctagtaggtcactaaaattttataaagcttatagattcaattttc |
350 |
Q |
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| T |
31932792 |
aataaacatatattttttaaaaggctaataggtcaataaaattttgtaaagcatgtacattcatttttc |
31932860 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 5863289 - 5863245
Alignment:
| Q |
288 |
catatatttcttaagaggctagtaggtcactaaaattttataaag |
332 |
Q |
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| T |
5863289 |
catatatttcttaagaggctggtaggtcaataaaattttgtaaag |
5863245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 35620718 - 35620669
Alignment:
| Q |
282 |
aataaacatatatttcttaagaggctagtaggtcactaaaattttataaa |
331 |
Q |
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| T |
35620718 |
aataaacatgtaattcttaaaaggctaataggtcaataaaattttataaa |
35620669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 30617281 - 30617362
Alignment:
| Q |
269 |
ttataaaaagtcgaataaacatatatttcttaagaggctagtaggtcactaaaattttataaagcttatagattcaattttc |
350 |
Q |
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| T |
30617281 |
ttataaaaaggctaataaacatatattttttaaaaggctaataggtaaataaaatttggtaaagcatatggatccatttttc |
30617362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 30628119 - 30628175
Alignment:
| Q |
269 |
ttataaaaagtcgaataaacatatatttcttaagaggctagtaggtcactaaaattt |
325 |
Q |
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| T |
30628119 |
ttataaaaaggctaataaacatatattttttaaaaggctattaggtaaataaaattt |
30628175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 13571544 - 13571601
Alignment:
| Q |
273 |
aaaaagtcgaataaacatatatttcttaagaggctagtaggtcactaaaattttataa |
330 |
Q |
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|||||| | ||||| ||||||||| ||||||| |||||| |||| ||||||||||||| |
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| T |
13571544 |
aaaaaggctaataagcatatattttttaagagactagtaagtcaataaaattttataa |
13571601 |
T |
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