View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16333_high_1_N (Length: 434)
Name: NF16333_high_1_N
Description: NF16333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16333_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 25 - 405
Target Start/End: Complemental strand, 30059550 - 30059170
Alignment:
| Q |
25 |
catcaaaactcaacactaaaacttccacaaacaaaacatagaaacaagacaacacagataacttgaaccaaacacctattgaaacatcactcgtttctct |
124 |
Q |
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| T |
30059550 |
catcaaaactcaacactaaaacttccacaaacaaaacatagaaacaagacaacacagataacttgaaccaaacacctattgaaacatcactcgtttctct |
30059451 |
T |
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| Q |
125 |
atcaataacactgcaaattggactatcatttgaggtagtactgtccttaacgattccaattctcttgtacacaagaatctttctaacagagacaacaaag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30059450 |
atcaataacactgcaaattggactatcatttgaggtagtactgtccttaacgattccaattctcttgtacacaagaatctttctaacagagacaacaaag |
30059351 |
T |
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| Q |
225 |
agaaacaacagaacaagagtcaagttcacgcatattgctgcaagttccaatacagacaatcccagaatcgtgctggaaagaatatggaacgatcctgaag |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30059350 |
agaaacaacagaacaagagtcaagttcacgcatattgctgcaagttccaatacagacaatcccagaatcgtgctggaaagaatatgcaacgatcctgaag |
30059251 |
T |
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| Q |
325 |
attcagaagttgataaagctgaaattttgtcgagaaattgggcaatacccattactgaatactgtctattgatgaagatgg |
405 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30059250 |
attcagaagttgataaagctgaaattttttcgagaaattgggcaatacccattactgaatactgtctatagatgaagatgg |
30059170 |
T |
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