View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16333_high_2 (Length: 403)
Name: NF16333_high_2
Description: NF16333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16333_high_2 |
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| [»] scaffold0129 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 382
Target Start/End: Complemental strand, 13473653 - 13473298
Alignment:
| Q |
23 |
catcatcaatatgtttttggttccgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccaatgagatgg |
122 |
Q |
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| T |
13473653 |
catcttcaatatgtttttggtttcgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccat----atga |
13473558 |
T |
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| Q |
123 |
acatcatccaagtgataattttcttcctcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagtatta |
222 |
Q |
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| T |
13473557 |
tcatctaccaagtgacaattttcttcttcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagtatta |
13473458 |
T |
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| Q |
223 |
tggaacccggctactaaggaaattaaggtcgtttaccctagccttaatgagtgtctatctaatgtcactaatgcatttagtcttcatgcatttggttatg |
322 |
Q |
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| T |
13473457 |
tggaacccggctactaaggaaattaaggtcgtttctcctagccttaacgagtgtctatctaatgtcactaatgcatttagtcttcatgcatttggttatg |
13473358 |
T |
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| Q |
323 |
atcatgttagagatgatttcaatgtcattcgacgtttgtattgtgatatatctgatgatg |
382 |
Q |
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| T |
13473357 |
atcatgttagagatgatttcaatgtcatttgacgtttgtattgtgatatatctgatgatg |
13473298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 26606657 - 26606709
Alignment:
| Q |
303 |
tcttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcgac |
355 |
Q |
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| T |
26606657 |
tcttcatggatttggttatgattctgttagagatgattacaaggtgattcgac |
26606709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 340
Target Start/End: Complemental strand, 27736033 - 27735998
Alignment:
| Q |
305 |
ttcatgcatttggttatgatcatgttagagatgatt |
340 |
Q |
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| T |
27736033 |
ttcatggatttggttatgatcatgttagagatgatt |
27735998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 9764 - 9801
Alignment:
| Q |
51 |
atgttgtatatgctttcaggtgagaggtttgagaataa |
88 |
Q |
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| T |
9764 |
atgttgtatttgctttctggtgagaggtttgagaataa |
9801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 17650 - 17601
Alignment:
| Q |
305 |
ttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcga |
354 |
Q |
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| T |
17650 |
ttcatggatttggttatgaccatgttagagatgactacaaagtcattcga |
17601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 34046 - 33997
Alignment:
| Q |
305 |
ttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcga |
354 |
Q |
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| T |
34046 |
ttcatggatttggttatgagcatgttagagatgactacaaggtcattcga |
33997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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