View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16333_high_3 (Length: 399)
Name: NF16333_high_3
Description: NF16333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16333_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 60 - 359
Target Start/End: Original strand, 4725686 - 4725984
Alignment:
| Q |
60 |
gacatggaactaaatttaagttgcaacattatttgatgagannnnnnnngcaacatttcatatttcccagttcccaccttatgatatactagtagactaa |
159 |
Q |
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| T |
4725686 |
gacatggaactaaatttaagttgcaacattatttgatgagattttttttgcaacatttcatatttcccagttcccaccttatgatata---gtagactaa |
4725782 |
T |
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| Q |
160 |
tgtttagccagatgcttggcgtgacaatttttnnnnnnngtgattaagtaannnnnnnnn--gagagaagagattaagtaattaataatttgatattcaa |
257 |
Q |
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| T |
4725783 |
tgtttagccagatgcttggcgtgacaatttttaaaaaaagtgattaagtactttttttttttgagagaagagattaagtaattaataatttgattttcaa |
4725882 |
T |
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| Q |
258 |
gattttgagtcacatacacaacaattatatatgaatttcnnnnnnnatgtaaatcatatatcaatctgcgcaacttagatactaacaagaagtaacttag |
357 |
Q |
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| T |
4725883 |
gattttgagtcacatacacaacaattatatatgaatttctttttttatgtaaatcatatatcaatctgcgcaacttagatactaacaagaagtaacttag |
4725982 |
T |
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