View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16333_high_4 (Length: 384)
Name: NF16333_high_4
Description: NF16333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16333_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 11119824 - 11119450
Alignment:
| Q |
9 |
gaagaaaatggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgat |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
11119824 |
gaaggaaatggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacctcaagccattcagtaatgat |
11119725 |
T |
|
| Q |
109 |
actgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttg |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11119724 |
actgatgcaactgcaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttg |
11119625 |
T |
|
| Q |
209 |
ttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtga |
308 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11119624 |
ctgattttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtga |
11119525 |
T |
|
| Q |
309 |
tgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtt |
383 |
Q |
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| T |
11119524 |
tgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtt |
11119450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 12206321 - 12205970
Alignment:
| Q |
9 |
gaagaaaatggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgat |
108 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
12206321 |
gaaggaaattgatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacgtcaagccaatcaggaatgat |
12206222 |
T |
|
| Q |
109 |
actgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttg |
208 |
Q |
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||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12206221 |
actgatgcaaccttaatgtctgattatgctcgtgataagaactgtgatgttgaa------------cctaaggtgaatttaggaaatgctataaatgttg |
12206134 |
T |
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| Q |
209 |
ttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
12206133 |
ctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagcagacagtgatgatgaagatgttagtagtga |
12206034 |
T |
|
| Q |
309 |
tgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggtt |
372 |
Q |
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||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12206033 |
tgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggctggggtt |
12205970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 32741528 - 32741154
Alignment:
| Q |
9 |
gaagaaaatggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgat |
108 |
Q |
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|||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32741528 |
gaaggaaatggatgatacttttgatgaatagttagtaaagctatggtggaaacatgagagtggttcattggatgaagacctcaagccattcaggaatgat |
32741429 |
T |
|
| Q |
109 |
actgatgcaactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttg |
208 |
Q |
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|||||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32741428 |
actgatgcaactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttg |
32741329 |
T |
|
| Q |
209 |
ttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtga |
308 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||| |||||||||||||||||| |
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| T |
32741328 |
ctgatgttattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtga |
32741229 |
T |
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| Q |
309 |
tgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggggttgatgataggtt |
383 |
Q |
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||||||||||| ||| |||||||||| |||| |||| ||||||||||||| |||||||| |||||||||| |||| |
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| T |
32741228 |
tgatggtgatttaattaaaggcacacgctttgatgatagtgaagaagagaagatggctgcggttgatgatgggtt |
32741154 |
T |
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