View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16333_high_5 (Length: 342)
Name: NF16333_high_5
Description: NF16333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16333_high_5 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr4 (7 HSPs) |
| |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
| [»] scaffold0292 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0125 (2 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0770 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
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| [»] scaffold0093 (1 HSPs) |
| | |
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| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 20971220 - 20970898
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| || |
|
|
| T |
20971220 |
gtggagagtcccaacggttccattgagcgtgtcacacactcatcccctcttgggagtgaggacgcacgacctgacggagtggaacagacaactcagatat |
20971121 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
20971120 |
cattggaggagttggagatacccacagtcgatgaggtttctgatccgcttcaggatgatgtggagcttgatcatgtgagcccacgagagctggtggagag |
20971021 |
T |
|
| Q |
220 |
tcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggccatcacgtgaatttg |
319 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20971020 |
tcccacgggtgctcctgagaatgtttcaagatcattcattgattaacatgttgacatgcatgagttagaggctgacctacagggccatcacgtgaatttg |
20970921 |
T |
|
| Q |
320 |
gacattgttaatactgaaaattc |
342 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
20970920 |
gacattgttactactgaaaattc |
20970898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 3581516 - 3581194
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| ||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
3581516 |
gtggagagtcccaaaggtttcattgagcgtgtcacacactcatcccctcttgggcgtgaggacgtacgacctgacggggtggaacatacaactcaaacat |
3581417 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
3581416 |
cattggaggagttggagatacccacggttgatgatgtttctgatccgcttcaggatgatgtggagcatgatcatgtgagcccacgggagttggtggagag |
3581317 |
T |
|
| Q |
220 |
tcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggccatcacgtgaatttg |
319 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
3581316 |
tcccacgtgtgctcgtgagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagatgctgacctacagggccatcacgtgaatttg |
3581217 |
T |
|
| Q |
320 |
gacattgttaatactgaaaattc |
342 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
3581216 |
gacattgttactactgaaaattc |
3581194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 92 - 325
Target Start/End: Original strand, 11071609 - 11071842
Alignment:
| Q |
92 |
gacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaac |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| | |
|
|
| T |
11071609 |
gacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggttgatgatgtttctgatccgcttcaggatgatgtggagcatgatc |
11071708 |
T |
|
| Q |
192 |
atgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggc |
291 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
11071709 |
atgtgagcccacgggagctggtggagagtcccacgggtgctcgtgagaatgcttcaagatcattcattgatgagtatgttgctatgcatgagttagaagc |
11071808 |
T |
|
| Q |
292 |
tgacctatagggccatcacgtgaatttggacatt |
325 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
11071809 |
tgacctacagggccatcacgtgaatttggacatt |
11071842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 14679054 - 14678910
Alignment:
| Q |
56 |
cactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgagg |
155 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||| || ||| ||||||||||||| |||||||||||||| |||| | | ||||| |
|
|
| T |
14679054 |
cactcatcccctcttgggcgtgaggacgtacgacctaacggagaggttcagttaactcagacatcgcgggaggagttggagaaccccaagattgatgatt |
14678955 |
T |
|
| Q |
156 |
tttttgatccgcttcaggatgatgtggagcatgaacatgtgagcc |
200 |
Q |
| |
|
||| ||| ||||||||||||| ||||||||| || |||| ||||| |
|
|
| T |
14678954 |
tttctgaaccgcttcaggatggtgtggagcaggaccatgcgagcc |
14678910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 11067796 - 11067863
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacg |
87 |
Q |
| |
|
|||||||||| ||| |||| |||||||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
11067796 |
gtggagagtcccaacggtttcattgagcgtctcacacactcttcccctcttgggcgtgaggacgtacg |
11067863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 3868893 - 3869193
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3868893 |
gtggagagtcccaacggttccattgagcgtgtcacacactcatcccctcttgggcgtgaggacgtacgacttgacggagtggaacagacaactcagacat |
3868992 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| | |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3868993 |
cgttggaggagttggagatacccacggtcgatgatgtttctgatccgctttaggatgatttagagcatgatcatgtgagcccacgggagctggtggagag |
3869092 |
T |
|
| Q |
220 |
tcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggccatcacgtgaatttg |
319 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
3869093 |
tcccacgggtgctcgtgagaatgttttaagatcattcattgatgatcatgttgacatgcatgagttagatgctgacctacagggccatcacgtgaatttg |
3869192 |
T |
|
| Q |
320 |
g |
320 |
Q |
| |
|
| |
|
|
| T |
3869193 |
g |
3869193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 279
Target Start/End: Original strand, 5115892 - 5116118
Alignment:
| Q |
53 |
acacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatg |
152 |
Q |
| |
|
||||||||||||| ||||| | ||||||| ||||| ||||||||| |||||||||||||||||| ||||| ||||||| |||||||| |||| |
|
|
| T |
5115892 |
acacactcatcccttcttgagtgtgaggacatacgatctaacggagtgggacagacaactcagacatcacgggaggtattggagaaccccacggttgatg |
5115991 |
T |
|
| Q |
153 |
aggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatc |
252 |
Q |
| |
|
| |||| ||| || |||||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||||| | |||||| || | |||| ||||| | |
|
|
| T |
5115992 |
atgtttctgaaccacttcaggatggtgtggaacatgatcatgtgagcccacatgagctgggggagagtcccaagggtgctcgtgaaagtgttccaagacc |
5116091 |
T |
|
| Q |
253 |
attcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
|| | || |||||||||||||||||| |
|
|
| T |
5116092 |
atcccctgttgagcatgttgacatgca |
5116118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 56 - 267
Target Start/End: Original strand, 20381800 - 20382011
Alignment:
| Q |
56 |
cactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgagg |
155 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||| | ||| ||||||| ||||| |||||||||||| | |||||| ||||||| |
|
|
| T |
20381800 |
cactcatcccctcttgggtgtgaggacatacgacctgacggaaaagttcagttaactcaggcatcgcaggaggagttggaaaaccccacgatcgatgatt |
20381899 |
T |
|
| Q |
156 |
tttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcatt |
255 |
Q |
| |
|
||| ||| ||||||||||||| |||||||||||| |||||||| ||| | ||||||| ||||||||||| | |||||| |||| |||| ||||| |||| |
|
|
| T |
20381900 |
tttctgaaccgcttcaggatggtgtggagcatgatcatgtgagaccaagggagctggaggagagtcccaagggtgctcgtgagagtgttccaagaccatt |
20381999 |
T |
|
| Q |
256 |
cattgatgagca |
267 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
20382000 |
caatgatgagca |
20382011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 25975840 - 25975640
Alignment:
| Q |
56 |
cactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgagg |
155 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||| |||||| || ||| |||||||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
25975840 |
cactcatcccctcctgggcgtgaggacttacgacctaacggagaggttcagttaactcagacatcaagggaggagttggagaaccccacgatcgatgagt |
25975741 |
T |
|
| Q |
156 |
tttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcatt |
255 |
Q |
| |
|
||| || ||||||||||||| |||||| || || |||||||||| ||| |||| || ||||||||||| | |||||| ||| ||||||||||| |||| |
|
|
| T |
25975740 |
tttccgaaccgcttcaggatggtgtggaacaggatcatgtgagcctacgggagcaggaggagagtcccaagggtgctcgtgagcatgtttcaagaccatt |
25975641 |
T |
|
| Q |
256 |
c |
256 |
Q |
| |
|
| |
|
|
| T |
25975640 |
c |
25975640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 35 - 342
Target Start/End: Original strand, 7189148 - 7189455
Alignment:
| Q |
35 |
ggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttgg |
134 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7189148 |
ggttccattgagcgtgtcacacacccatcccctcttgggcgtgacgacgtacgacccgactaagtggaacagacaactccgacatcgttggaggagttgg |
7189247 |
T |
|
| Q |
135 |
agatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctcc |
234 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7189248 |
agatacccacggccgatgatgtttctgatccgcttcaggatgatgtggagcatgatcatgtgagcccacaggagctggtggagagtcccacgggtgcttg |
7189347 |
T |
|
| Q |
235 |
ggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggccatcacgtgaatttggacattgttaatact |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
7189348 |
tgagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgatctacagggccatcacgtgaatttggacattgttactact |
7189447 |
T |
|
| Q |
335 |
gaaaattc |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
7189448 |
gaaaattc |
7189455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 53 - 283
Target Start/End: Original strand, 17940148 - 17940378
Alignment:
| Q |
53 |
acacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatg |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||| |||||||||| ||||| |||||||| |||| |||| ||| |
|
|
| T |
17940148 |
acacactcatcccctcttgggcgtgaggacatacgacccgacggagtggcacagacaaatcagacatcgcgggaggtgttggagaaccccaaggtcaatg |
17940247 |
T |
|
| Q |
153 |
aggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatc |
252 |
Q |
| |
|
| ||| ||| || |||||||||| ||||| ||||| |||||||||||| | ||||||||||||||||||| | |||||| |||| |||| || || | |
|
|
| T |
17940248 |
atttttctgaaccacttcaggatgttgtggtacatgatcatgtgagcccatgggagctggtggagagtcccaagggtgctcgtgagagtgttgcacgacc |
17940347 |
T |
|
| Q |
253 |
attcattgatgagcatgttgacatgcatgag |
283 |
Q |
| |
|
|| | ||| |||||||| ||||||||||||| |
|
|
| T |
17940348 |
atcccttgttgagcatgatgacatgcatgag |
17940378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 206 - 342
Target Start/End: Complemental strand, 39914614 - 39914477
Alignment:
| Q |
206 |
gagctggtggagagtccca-cgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggc |
304 |
Q |
| |
|
||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
39914614 |
gagctcgtggagagtcccaacgggtgctcgtgagaatgtttcaagatcattcattgatgagcatgttgacatgcctgagttagatgctgacctacagggc |
39914515 |
T |
|
| Q |
305 |
catcacgtgaatttggacattgttaatactgaaaattc |
342 |
Q |
| |
|
||||| |||||||||||||| |||| | |||||||||| |
|
|
| T |
39914514 |
catcaagtgaatttggacatggttactcctgaaaattc |
39914477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 11486038 - 11485917
Alignment:
| Q |
162 |
atccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattcattga |
261 |
Q |
| |
|
||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||| ||| | || |
|
|
| T |
11486038 |
atccgcttcaggatggtgtggaacaggatcatgtgagcccacgagagctggtggagagtcccaagggtgctcgtgagaatgttgcaagaccatcccctgt |
11485939 |
T |
|
| Q |
262 |
tgagcatgttgacatgcatgag |
283 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
11485938 |
tgagcatattgaaatgcatgag |
11485917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 283
Target Start/End: Complemental strand, 15442332 - 15442102
Alignment:
| Q |
53 |
acacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatg |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| | | || |||||| ||| |||| |||||||||| ||||| |||||||| || | |||||||| |
|
|
| T |
15442332 |
acacactcatcccctcttgggcgtgaggacatacggcccaacagagtggcacaaacaaatcagacatcgcgggaggtgttggagaaccctaaggtcgatg |
15442233 |
T |
|
| Q |
153 |
aggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatc |
252 |
Q |
| |
|
| ||| ||| || ||| |||||| ||||| ||||| ||| |||||| ||| |||||| || ||||||||| | |||||| |||| |||| || || | |
|
|
| T |
15442232 |
atttttctgaaccactttaggatggtgtggtacatgatcatatgagccaacgggagctgatgaagagtcccaagggtgctcgtgagagtgttgcacgacc |
15442133 |
T |
|
| Q |
253 |
attcattgatgagcatgttgacatgcatgag |
283 |
Q |
| |
|
|| | | |||||||| ||||||||||||| |
|
|
| T |
15442132 |
atcccctattgagcatgatgacatgcatgag |
15442102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 1929382 - 1929255
Alignment:
| Q |
152 |
gaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagat |
251 |
Q |
| |
|
||||||| ||| || |||||||||| ||||||||| | ||||||||||| || ||||||| ||||||||||| | |||||| |||| |||| |||| |
|
|
| T |
1929382 |
gaggtttctgaaccacttcaggatggtgtggagcaaaatcatgtgagcccgcgggagctggaggagagtcccaagggtgctcgtgagattgttccaaggc |
1929283 |
T |
|
| Q |
252 |
cattcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
||| | || |||||||||||||||||| |
|
|
| T |
1929282 |
catctaatgttgagcatgttgacatgca |
1929255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 279
Target Start/End: Original strand, 34511326 - 34511466
Alignment:
| Q |
139 |
acccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggag |
238 |
Q |
| |
|
||||||||| ||||| |||| ||| || |||||||||| |||||| ||||| ||||||||||||| ||||| | |||||| |||| | |||||| || |
|
|
| T |
34511326 |
acccacggttgatgatgtttctgaaccacttcaggatggtgtggaacatgatcatgtgagcccacaggagctaggggagagccccaagggtgctcgtgaa |
34511425 |
T |
|
| Q |
239 |
aatgtttcaagatcattcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
| |||| ||| | ||| | || |||||||||||||||||| |
|
|
| T |
34511426 |
agtgttccaaaaccatcccatgttgagcatgttgacatgca |
34511466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 3547703 - 3547400
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| ||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
3547703 |
gtggagagtcccaacggtttcattgagcgtgtcacacactcatcccctcttgggcgtgaggacgtacgacctgacggagtggaacggacaactcagacat |
3547604 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
3547603 |
cgttggaggagttggagatacccacggtcgatgatgtttctaatccgcttcaggatgatgtggagcatgatcacgtgagcccacgggagctggtggagag |
3547504 |
T |
|
| Q |
220 |
tcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggccatcacgtgaatttg |
319 |
Q |
| |
|
|| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||| |
|
|
| T |
3547503 |
tctcacaggtgctcgtgagaatgtttcaagatcattcattgataagcatgttgacatgcatgagtcagatgctgacctacatggccatcacgtgaatttg |
3547404 |
T |
|
| Q |
320 |
gaca |
323 |
Q |
| |
|
|||| |
|
|
| T |
3547403 |
gaca |
3547400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 19585281 - 19585512
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| ||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
19585281 |
gtggagagtcccaacggttgcattgagcgtgtcacacactcatcccctcttgggcgtgaggacgtacgacctgatggagtggaacagacaactcagacat |
19585380 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||| |||||||||| |||||||||||||| |||| ||| |||||||||| |||||||||||||| |
|
|
| T |
19585381 |
cgttggaggaattggagatacccacggtcaatgatgtttctgatccgcttaaggatgatgtggagtatgatcatatgagcccacgggagctggtggagag |
19585480 |
T |
|
| Q |
220 |
tcccacgagtgctccggagaatgtttcaagat |
251 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |
|
|
| T |
19585481 |
tcccacgggtgctcgtgagaatgtttcaagat |
19585512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 283
Target Start/End: Original strand, 12435092 - 12435322
Alignment:
| Q |
53 |
acacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatg |
152 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||| ||||||||||| ||| | || |||||||||| ||||| |||||| | |||| |||||||| |
|
|
| T |
12435092 |
acacactcatccgctcttgggcgtgaggacatacgacccgacggagtggcacaaagaaatcagacatcgcgggaggtgttggaaaaccccaaggtcgatg |
12435191 |
T |
|
| Q |
153 |
aggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatc |
252 |
Q |
| |
|
| ||| ||| || ||||||| || ||||| ||||| |||||||||||||| |||| | |||||||||||| | |||||| |||| |||| || || | |
|
|
| T |
12435192 |
atttttctgaaccacttcaggttggtgtggtacatgatcatgtgagcccacgggagccgatggagagtcccaagggtgctcatgagagtgttgcacgacc |
12435291 |
T |
|
| Q |
253 |
attcattgatgagcatgttgacatgcatgag |
283 |
Q |
| |
|
|| | || |||||||| ||||||||||||| |
|
|
| T |
12435292 |
atcccctgttgagcatgatgacatgcatgag |
12435322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 263
Target Start/End: Original strand, 21253139 - 21253348
Alignment:
| Q |
54 |
cacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatga |
153 |
Q |
| |
|
|||||| |||||| |||||| ||||||| |||||| | ||||| || ||| ||||| | ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
21253139 |
cacacttatccccccttgggtgtgaggacatacgacctgtcggagaggctcagttaactcgggcatcgctggaggagttggagaaccccacggtcgatga |
21253238 |
T |
|
| Q |
154 |
ggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatca |
253 |
Q |
| |
|
||| ||| ||||||||||||| |||||||||||| |||||||||| ||| ||||||| ||||||||||| | ||||| |||| |||| ||||| || |
|
|
| T |
21253239 |
tttttctgaaccgcttcaggatggtgtggagcatgatcatgtgagcctacgggagctggaggagagtcccaagggtgctagtgagagtgttccaagacca |
21253338 |
T |
|
| Q |
254 |
ttcattgatg |
263 |
Q |
| |
|
|||| ||||| |
|
|
| T |
21253339 |
ttcaatgatg |
21253348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 18307667 - 18307607
Alignment:
| Q |
164 |
ccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtccca |
224 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
18307667 |
ccgcttcaggatggtgtggaacatgatcatgtgagcccaagggagctggtggagagtccca |
18307607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 33313391 - 33313510
Alignment:
| Q |
164 |
ccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattcattgatg |
263 |
Q |
| |
|
||||||||||||| |||| | ||||| |||||||||||| ||| ||||||||||||||| | |||||| |||| |||| || |||||| | || || |
|
|
| T |
33313391 |
ccgcttcaggatggtgtgaaacatgatcatgtgagcccaacggaggtggtggagagtcccaagggtgctcgtgagagtgttgcatgatcatcccctgttg |
33313490 |
T |
|
| Q |
264 |
agcatgttgacatgcatgag |
283 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
33313491 |
agcatgtagacatgcatgag |
33313510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 28683777 - 28683472
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| ||| |||| ||||||| || |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
28683777 |
gtggagagtcccaacggtttcattgagagtgtcacacactcatcccctcttgggcgtgaggacgtacgccctgacggagtggaacagacaactcagacat |
28683678 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
28683677 |
cgttggaggagttgcagatacccacggtcgatgatgtttctgatccacttcaggatgatgtggagcatgatcatgtgatcccacgggagctggtggagag |
28683578 |
T |
|
| Q |
220 |
tcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggccatcacgtgaatttg |
319 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
28683577 |
tcccacgggtgctcgtgagaatgcttcaagatcattcattgatgagcatgttgctatgcatgcgttagatgctgacctacagggccatcacgtgaatttg |
28683478 |
T |
|
| Q |
320 |
gacatt |
325 |
Q |
| |
|
||||| |
|
|
| T |
28683477 |
tacatt |
28683472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 13643782 - 13643579
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| || ||||| | ||||||| |||||||||||||||||||||| ||||||| ||| || | ||||||||| |||||||| ||| |||| |
|
|
| T |
13643782 |
gtggagagtcctaagggttctaatgagcgtgatacacactcatcccctcttgggcgtgaggacatacaacccaacggagtggcacagacaaatcaaacat |
13643683 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
||| ||||| |||||||| |||| ||||||||| ||| ||| || |||||||||| ||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
13643682 |
cgtgggaggtgttggagaaccccaaggtcgatgatttttctgaaccacttcaggatggtgtggtacatgatcatgtgagcccacgggagctggtggagag |
13643583 |
T |
|
| Q |
220 |
tccc |
223 |
Q |
| |
|
|||| |
|
|
| T |
13643582 |
tccc |
13643579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 35340892 - 35341011
Alignment:
| Q |
164 |
ccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattcattgatg |
263 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| | | | ||||||||||||||||||| | |||||| |||| |||| || |||||| | || || |
|
|
| T |
35340892 |
ccgcttcaggatggtgtggaacatgatcatgtgaggctaagggagctggtggagagtcccaagggtgctcgtgagagtgttgcatgatcatcccatgttg |
35340991 |
T |
|
| Q |
264 |
agcatgttgacatgcatgag |
283 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
35340992 |
agcatgtagacatgcatgag |
35341011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 279
Target Start/End: Complemental strand, 21898831 - 21898701
Alignment:
| Q |
149 |
gatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaa |
248 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||||||||| | ||||||||||| || |||||| ||||||||||| | |||||| |||| |||| ||| |
|
|
| T |
21898831 |
gatgaggtttctgaaccacttcaggatggtgtggagcaaaatcatgtgagcccgcggcagctggaggagagtcccaagggtgctcgtgagattgttccaa |
21898732 |
T |
|
| Q |
249 |
gatcattcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
| ||| || || |||||||||||||||||| |
|
|
| T |
21898731 |
ggccatccaatgttgagcatgttgacatgca |
21898701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 757 - 454
Alignment:
| Q |
22 |
ggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcg |
121 |
Q |
| |
|
|||||||| ||| |||| |||||||||| ||||||||||||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
757 |
ggagagtcccaacggtttcattgagcgtgtcacacactcatcccctattgggcgtgaggacgtacgccctgacggagtggaacagacaactcagacatcg |
658 |
T |
|
| Q |
122 |
ttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||| || |||||||||||||| |||| ||||||||||| |
|
|
| T |
657 |
ttggaggagttggagatacccacggtcgatgatgtttctggtctgcttcaggatgatgtggagcacgatcatgtgagcccacgggagcgggtggagagtc |
558 |
T |
|
| Q |
222 |
ccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgagttagaggctgacctatagggccatcacgtgaatttgga |
321 |
Q |
| |
|
||||| |||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
557 |
ccacgggtgctcgtgagaatgtatcaagatccttcattgatgagcatgttgctatgcatgagttagatgctgacctacagggccatcacgtgaatttgga |
458 |
T |
|
| Q |
322 |
catt |
325 |
Q |
| |
|
|||| |
|
|
| T |
457 |
catt |
454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0292 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0292
Description:
Target: scaffold0292; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 54 - 283
Target Start/End: Original strand, 20319 - 20548
Alignment:
| Q |
54 |
cacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatga |
153 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
20319 |
cacactcattccctcttgggcgtgaggacatacgacctgacggagtggcgcagacaactcagacatcgcgggaggagttggagaaccccacggtcgatga |
20418 |
T |
|
| Q |
154 |
ggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatca |
253 |
Q |
| |
|
|||| || |||||| ||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| | |||||| |||| ||||||||||||| |
|
|
| T |
20419 |
tgtttatgcaccgctttaggatgatgtggaacatgatcatgtgagcccacgggagctagtggagagtcccaagggtgctcgtgagagtgtttcaagatca |
20518 |
T |
|
| Q |
254 |
ttcattgatgagcatgttgacatgcatgag |
283 |
Q |
| |
|
| | || || ||||| ||||||||||||| |
|
|
| T |
20519 |
tcccctgttgcgcatgatgacatgcatgag |
20548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 23486549 - 23486812
Alignment:
| Q |
20 |
gtggagagtcacaatggttccattgagcgtatcacacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacat |
119 |
Q |
| |
|
|||||||||| || ||||| | ||||||| |||||||||||||||||||||| ||||||| |||||| |||| |||||| | |||||| ||| |||| |
|
|
| T |
23486549 |
gtggagagtcctaagggttctaatgagcgtgatacacactcatcccctcttgggcgtgaggacatacgacccgacagagtggcaaagacaaatcaaacat |
23486648 |
T |
|
| Q |
120 |
cgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagag |
219 |
Q |
| |
|
|| ||||| |||||||| |||| ||||||||| ||| | | || |||||||||| ||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
23486649 |
cgcgggaggtgttggagaaccccaaggtcgatgatttttctaaaccacttcaggatggtgtggtacatgatcatgtgagcccacgggagctggtggagag |
23486748 |
T |
|
| Q |
220 |
tcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacatgcatgag |
283 |
Q |
| |
|
|||| | |||||| |||| |||| || || ||| | || |||||||| ||||||||||||| |
|
|
| T |
23486749 |
tcccgagggtgctcgtgagagtgttgcacgaccatcccctgttgagcatgatgacatgcatgag |
23486812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 41358114 - 41357920
Alignment:
| Q |
56 |
cactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgagg |
155 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| | || || || |||||||||||||||||| ||||| |||||||| |||| | | ||||| |
|
|
| T |
41358114 |
cactcatcccctcttgggtgtgaggacatacgacttgtcgaagaggttcagacaactcagacatcgcgggaggtgttggagaaccccaagattgatgatt |
41358015 |
T |
|
| Q |
156 |
tttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaaga |
250 |
Q |
| |
|
||||||| ||||||||||||| |||||| || || ||||||||||| || |||||||| |||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
41358014 |
tttttgaaccgcttcaggatggtgtggaacaggatcatgtgagccctcgggagctggtcgagagtcccacgggtgctcgtgagaatgttacaaga |
41357920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 13310239 - 13310060
Alignment:
| Q |
97 |
agtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtg |
196 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||||| ||||| || |||| |||| ||| || ||||||| || |||||| ||||| |||||| |
|
|
| T |
13310239 |
agtggcacagacaactcagacatcgcgggaggtgttggagaaccccacagttaatgatgtttctgaaccacttcaggttggtgtggaacatgatcatgtg |
13310140 |
T |
|
| Q |
197 |
agcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattcattgatgagcatgttgacat |
276 |
Q |
| |
|
||||||| ||||||| | ||||||||| | |||||| || | |||||||||| ||| | || ||||||||||||||| |
|
|
| T |
13310139 |
agcccacaggagctggggaagagtcccaagggtgctcgtgaaagtgtttcaagaccatcccctgttgagcatgttgacat |
13310060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 283
Target Start/End: Original strand, 30731474 - 30731589
Alignment:
| Q |
168 |
ttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattcattgatgagca |
267 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| | |||||| ||||||||| ||||| ||| | || |||||| |
|
|
| T |
30731474 |
ttcaggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgctcgtgagaatgttacaagaccatcccctgttgagca |
30731573 |
T |
|
| Q |
268 |
tgttgacatgcatgag |
283 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
30731574 |
tgttgaaatgcatgag |
30731589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 21808475 - 21808602
Alignment:
| Q |
152 |
gaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagat |
251 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||| | ||||||||||| || ||||||| ||||||||||| | |||||| |||| |||| |||| |
|
|
| T |
21808475 |
gaggtttttgaaccacttcaggatggtgtggagcaaaatcatgtgagcccgcgggagctggaggagagtcccaagggtgctcgtgagattgttccaaggc |
21808574 |
T |
|
| Q |
252 |
cattcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
||| || || |||||||||||||||||| |
|
|
| T |
21808575 |
catccaatgttgagcatgttgacatgca |
21808602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 250
Target Start/End: Original strand, 21459955 - 21460148
Alignment:
| Q |
57 |
actcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgaggt |
156 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||| || || ||| |||||| |||||| |||||||||||||| |||| | ||||||| | |
|
|
| T |
21459955 |
actcatcccctcttgggcgtgaggacatacgacctaacgaagaggttcagttaactcaaacatcgcgggaggagttggagaaccccaagatcgatgattt |
21460054 |
T |
|
| Q |
157 |
ttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaaga |
250 |
Q |
| |
|
|| | | |||||||||||| ||||||||| || |||||||||| || ||||||| | ||||| ||| |||||| ||||||||| ||||| |
|
|
| T |
21460055 |
ttctaaatcgcttcaggatggtgtggagcaggaccatgtgagccttcgggagctggagaagagttccaaaggtgctcgtgagaatgttccaaga |
21460148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 19494668 - 19494862
Alignment:
| Q |
56 |
cactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgagg |
155 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| | || || || |||||||||||||||||| ||||| |||||||| |||| | | ||||| |
|
|
| T |
19494668 |
cactcatcccctcttgggtgtgaggacatacgacttgtcgaagaggttcagacaactcagacatcgcgggaggtgttggagaaccccaagattgatgatt |
19494767 |
T |
|
| Q |
156 |
tttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaaga |
250 |
Q |
| |
|
||||||| ||||||||||||| |||||| || || ||||||||||| || |||||||| |||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
19494768 |
tttttgaaccgcttcaggatggtgtggaacaggatcatgtgagccctcgggagctggtcgagagtcccacgggtgctcgtgagaatgttacaaga |
19494862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 4206917 - 4206796
Alignment:
| Q |
162 |
atccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattcattga |
261 |
Q |
| |
|
||||||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||| | |||||| ||||||||| ||||| ||| | || |
|
|
| T |
4206917 |
atccgcttcaggatggtgtggaataggatcatgtgagcccacgggagctggtggagagtcccaagggtgctcgtgagaatgttacaagaccatcccctgt |
4206818 |
T |
|
| Q |
262 |
tgagcatgttgacatgcatgag |
283 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
4206817 |
tgagcatgttgaaatgcatgag |
4206796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 263
Target Start/End: Original strand, 38989 - 39128
Alignment:
| Q |
124 |
ggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtccc |
223 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||| |||||||||| ||| ||||||| |||||||||| |
|
|
| T |
38989 |
ggaggagttggagaaccccacggtcgatgatttttctgaaccgcttcaggatggtgtggagcatgatcatgtgagcctacgggagctggaggagagtccc |
39088 |
T |
|
| Q |
224 |
acgagtgctccggagaatgtttcaagatcattcattgatg |
263 |
Q |
| |
|
| | ||||| |||| |||| ||||| |||||| ||||| |
|
|
| T |
39089 |
aagggtgctaatgagagtgttccaagaccattcaatgatg |
39128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 159790 - 159651
Alignment:
| Q |
124 |
ggaggagttggagatacccacggtcgatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtccc |
223 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||| |||||||||| ||| ||||||| |||||||||| |
|
|
| T |
159790 |
ggaggagttggagaaccccacggtcgatgatttttctgaaccgcttcaggatggtgtggagcatgatcatgtgagcctacgggagctggaggagagtccc |
159691 |
T |
|
| Q |
224 |
acgagtgctccggagaatgtttcaagatcattcattgatg |
263 |
Q |
| |
|
| | ||||| |||| |||| ||||| |||||| ||||| |
|
|
| T |
159690 |
aagggtgctaatgagagtgttccaagaccattcaatgatg |
159651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 20941640 - 20941441
Alignment:
| Q |
56 |
cactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgagg |
155 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||| |||||| || ||| ||||||||| || |||||||||||||| |||||| |||||||| |
|
|
| T |
20941640 |
cactcatcccctcctgggcgtgaggacttacgacctaacggagaggttcagttaactcagac-tcaagggaggagttggagaaccccacgatcgatgagt |
20941542 |
T |
|
| Q |
156 |
tttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcatt |
255 |
Q |
| |
|
||| || ||||||||||||| |||||| || || |||||||||| ||| ||||||| ||||||||||| | |||||| ||| ||||||||||| |||| |
|
|
| T |
20941541 |
tttccgagccgcttcaggatggtgtggaacaggatcatgtgagcctacgggagctggaggagagtcccaagggtgctcgtgagcatgtttcaagaccatt |
20941442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 264
Target Start/End: Complemental strand, 30652 - 30445
Alignment:
| Q |
57 |
actcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgaggt |
156 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||| || ||| |||| |||||||| |||||||||||||| |||| ||||||||| | |
|
|
| T |
30652 |
actcatcccctcttgggcgtgaggacatacgacctaacggagaggttcagttaacttagacatcgcgggaggagttggagaaccccaaggtcgatgattt |
30553 |
T |
|
| Q |
157 |
ttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagatcattc |
256 |
Q |
| |
|
|| ||| || |||||||||| ||||||||| || |||||||||| || ||||||| | ||||||||| |||||| ||||||||| ||||| ||| | |
|
|
| T |
30552 |
ttctgaaccacttcaggatggtgtggagcaggaccatgtgagccttcgggagctggagaagagtcccaaaggtgctcgtgagaatgttccaagaccatcc |
30453 |
T |
|
| Q |
257 |
attgatga |
264 |
Q |
| |
|
||||||| |
|
|
| T |
30452 |
cttgatga |
30445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 39963 - 39796
Alignment:
| Q |
57 |
actcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttggaggagttggagatacccacggtcgatgaggt |
156 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||| |||||| || ||| ||||||||||||| |||||||||||||| |||| | ||||||| | |
|
|
| T |
39963 |
actcatcccctcctgggcgtgaggacatacgacctaacggagaggttcagttaactcagacatcgcgggaggagttggagaaccccaagatcgatgattt |
39864 |
T |
|
| Q |
157 |
ttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtccca |
224 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||| || |||||||||| || ||||||| | ||||||||| |
|
|
| T |
39863 |
ttctgaaccgcttcaggatggtgtggagcaggaccatgtgagccttcgggagctggagaagagtccca |
39796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 24334 - 24207
Alignment:
| Q |
152 |
gaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagat |
251 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||| | ||||||||||| || ||||||| ||||||||||| | |||||| |||| |||| |||| |
|
|
| T |
24334 |
gaggtttttgaaccacttcaggatggtgtggagcaaaatcatgtgagcccgcgggagctggaggagagtcccaagggtgctcgtgagattgttccaaggc |
24235 |
T |
|
| Q |
252 |
cattcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
||| || || |||||||||||||||||| |
|
|
| T |
24234 |
catccaatgttgagcatgttgacatgca |
24207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 5590 - 5721
Alignment:
| Q |
152 |
gaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagat |
251 |
Q |
| |
|
||||||| ||| || |||||||||| ||||||||| | ||||||||||| || ||||||| ||||||||||| | |||| | |||| |||| |||| |
|
|
| T |
5590 |
gaggtttctgaaccacttcaggatggtgtggagcaaaatcatgtgagcccgcgggagctggaggagagtcccaagggtgcccgtgagattgttccaaggc |
5689 |
T |
|
| Q |
252 |
cattcattgatgagcatgttgacatgcatgag |
283 |
Q |
| |
|
||| || || |||||||||||||||||||||| |
|
|
| T |
5690 |
catccaatgttgagcatgttgacatgcatgag |
5721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 103888 - 104019
Alignment:
| Q |
152 |
gaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaagat |
251 |
Q |
| |
|
||||||| ||| || |||||||||| ||||||||| | ||||||||||| || ||||||| ||||||||||| | |||| | |||| |||| |||| |
|
|
| T |
103888 |
gaggtttctgaaccacttcaggatggtgtggagcaaaatcatgtgagcccgcgggagctggaggagagtcccaagggtgcccgtgagattgttccaaggc |
103987 |
T |
|
| Q |
252 |
cattcattgatgagcatgttgacatgcatgag |
283 |
Q |
| |
|
||| || || |||||||||||||||||||||| |
|
|
| T |
103988 |
catccaatgttgagcatgttgacatgcatgag |
104019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 279
Target Start/End: Original strand, 11327 - 11457
Alignment:
| Q |
149 |
gatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaa |
248 |
Q |
| |
|
||||| |||| ||| || |||||| ||| |||||||| || ||||||||||| | ||||||| ||||||||||| | |||||| |||| |||| ||| |
|
|
| T |
11327 |
gatgatgtttctgaaccacttcagaatggtgtggagcgagatcatgtgagcccgctggagctggaggagagtcccaagggtgctcgtgagattgttccaa |
11426 |
T |
|
| Q |
249 |
gatcattcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
| || |||||||||||||||||||||||| |
|
|
| T |
11427 |
ggccacccattgatgagcatgttgacatgca |
11457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 279
Target Start/End: Complemental strand, 60471 - 60341
Alignment:
| Q |
149 |
gatgaggtttttgatccgcttcaggatgatgtggagcatgaacatgtgagcccacgagagctggtggagagtcccacgagtgctccggagaatgtttcaa |
248 |
Q |
| |
|
|||||||||| ||| || | |||||||| ||||||||| | ||||||||||| || ||||||| ||||||||| | | |||||| |||| |||| ||| |
|
|
| T |
60471 |
gatgaggtttctgaaccacgtcaggatggtgtggagcaaaatcatgtgagcccgcgggagctggaggagagtcctaagggtgctcgtgagattgttccaa |
60372 |
T |
|
| Q |
249 |
gatcattcattgatgagcatgttgacatgca |
279 |
Q |
| |
|
||| ||||| || ||||||||||||||| |
|
|
| T |
60371 |
cgccatccattgttgtgcatgttgacatgca |
60341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 60558 - 60486
Alignment:
| Q |
53 |
acacactcatcccctcttgggcatgaggacgtacgactcgacggagtggaacagacaactcagacatcgttgg |
125 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||| | |||| |||||||||| ||||| ||| ||||||| |
|
|
| T |
60558 |
acacactcatcccctcttaggcgtgaggacatacggcctaacggggtggaacagataactcggacgtcgttgg |
60486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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