View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16333_high_8 (Length: 307)
Name: NF16333_high_8
Description: NF16333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16333_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 28448126 - 28447983
Alignment:
| Q |
1 |
tcgatgtagaggggaggtctgtaggcctgacgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaaaataggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28448126 |
tcgatgtagaggggaggtctgtaggtctgatgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaaaataggaa |
28448027 |
T |
|
| Q |
101 |
ccccagagagaggaacaccgaagccaaggccagccaaagcccaa |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28448026 |
ccccagagagaggaacaccgaagccaaggccagccaaagcccaa |
28447983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 18690684 - 18690607
Alignment:
| Q |
65 |
attgaaggccgtaacttccaacgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagccc |
142 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18690684 |
attgaaggttgtaacttccaacgcaaaaactaggaacctcagagagaggaacaccgaagccaaggccaaccaaagccc |
18690607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University