View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16334_high_2 (Length: 313)
Name: NF16334_high_2
Description: NF16334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16334_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 34646362 - 34646569
Alignment:
| Q |
13 |
aaaatatggtcagagagctaccatagatcaaatatccatatcaactctatgaagaatgtttacttggaaagcaattcaggacgaagttttccaaag-agt |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |
|
|
| T |
34646362 |
aaaatatggtcagagagctaccataaatcaaatatccatatcaactttatgaagaatgtttacttggaaagcaattcaggacg-agtttttcaaagtagt |
34646460 |
T |
|
| Q |
112 |
caagttcagaagcaaagaagtcgctcaagcttatacatgttaatgtttatgttaatgtttgtgggtcaatcaagccaaact--ctacgtaaaaatcacaa |
209 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34646461 |
caagttcaaaagcaaagaagtcgctcgagcttatac------------atgttaatgtttgtgggtcaatcaagccaaactcactacgtaaaaatcacaa |
34646548 |
T |
|
| Q |
210 |
ttttctctttttcgttgatga |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34646549 |
ttttctctttttcgttgatga |
34646569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 34646591 - 34646633
Alignment:
| Q |
250 |
tgcatgggtctatttcttgatgctgaaataaaaagtctttact |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646591 |
tgcatgggtctatttcttgatgctgaaataaaaagtctttact |
34646633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University