View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16335_high_3 (Length: 366)
Name: NF16335_high_3
Description: NF16335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16335_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 42747631 - 42747266
Alignment:
| Q |
1 |
tatggtacaaagtcagttaaaatcccaaaactaggaaaactaagaaaaccaagagacaaaataaccaaaataatcatggccaagaaccaagatatgaaat |
100 |
Q |
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| T |
42747631 |
tatggtacaaattcagttaaaatcccaaaactaggaaaactaagaaaaccaagaaacaaaataaccaaaataatcatggccaagaaccaagatatgaaat |
42747532 |
T |
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| Q |
101 |
tgaactcatgagctattattaagaaaacataaaaagtttatttctttttctttgatttgaaaaatgtaggtaagtgttaccatgacatcatagatagaag |
200 |
Q |
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| T |
42747531 |
tgaactaatgagctattattaagaaaacataaaaagtttatttctttttctttgatttgaaaaatgtaggtaagtgttaccatgacatcatagatagaag |
42747432 |
T |
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| Q |
201 |
cagtgagaccaaaatcagaaacagcacgaccaaacccaacgaacaaatcccgttcaggagaaacaggagtgaagaaatcaacaacagaagataaagattc |
300 |
Q |
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| T |
42747431 |
cagtgagaccaaaatcagaaacagcacgaccaaacccaacgaacaaatcccgttcaggagaaacaggagtaaagaaatcaacaacagaagataaagattc |
42747332 |
T |
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| Q |
301 |
atctaaaccatcaacatgacgaggtttacagaaaacagagacaagaacatcactatgagaaagagc |
366 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42747331 |
atctaaaccatcaacatgatgaggtttacagaaaacagagacaagaacatcactatgagaaagagc |
42747266 |
T |
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