View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16335_high_4 (Length: 249)
Name: NF16335_high_4
Description: NF16335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16335_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 49935377 - 49935609
Alignment:
| Q |
1 |
tccttgaaaatttgcactctataccaaattaatcatgcgttgattctttcttatataggcagtttaccgtggtatttcttacgatgatcaaacgctatta |
100 |
Q |
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| T |
49935377 |
tccttgaaaatttgcactctataccaaattaatcatgcgttgattctttcttatataggcagtttaccatggtatttcttacgatgaccaaacgctatta |
49935476 |
T |
|
| Q |
101 |
agaattggcatggaactcttacgtgccattcaagatattgcgttacagttagagaaggtaaattttttgcatctgctcactttctgttgcttggatattt |
200 |
Q |
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| T |
49935477 |
aaaattggcatggaactc-----tgccatttaagatattgcgttacggttagagaaggtaaattttttgcatttgctcactttctgttgcttggatattt |
49935571 |
T |
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| Q |
201 |
gaatttcttcaatcctatagccgtgttttttgcattca |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49935572 |
gaatttcttcaatcctatagccgtgttttttgcattca |
49935609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49930752 - 49930970
Alignment:
| Q |
1 |
tccttgaaaatttgcactctataccaaattaatcatgcgttgattctttcttatataggcagtttaccgtggtatttcttacgatgatcaaacgctatta |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||||||| | |||| |
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| T |
49930752 |
tccttgaaaatttgcactcta--ccaaattaactatgcattggctctttcttttataggcagtttacaatgttatttcttacgatgatcaaacacgatta |
49930849 |
T |
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| Q |
101 |
agaattggcatggaactcttacgtgccattcaagatattgcgttacagttagagaaggtaaattttttgcatctgctcactttctgttgcttggatattt |
200 |
Q |
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| T |
49930850 |
agaactggcatggaactcttaagtgccactcaagatattgagtcacagttggagaaggtaaactttttgcatttgctcactttctgttacttggatagtt |
49930949 |
T |
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| Q |
201 |
gaatttcttcaatcctatagc |
221 |
Q |
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||||||| | || ||||||| |
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| T |
49930950 |
taatttctcctatactatagc |
49930970 |
T |
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