View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16335_low_10 (Length: 219)
Name: NF16335_low_10
Description: NF16335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16335_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 50227447 - 50227660
Alignment:
| Q |
6 |
agcaatagcagaatatgagtatacatctggtttcaaatccctactttcaagtaaactcaacatttccacagcttgtcccatttccccagatttggaataa |
105 |
Q |
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| T |
50227447 |
agcaatagcagaatatgagtatacatctggtttcaaatccctactttcaagtagactcaacatttccacagcttgtcccatttccccagctttggaataa |
50227546 |
T |
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| Q |
106 |
ccagtgataacaaaattgaaagtagcatttctaggaggtggaccattagcaatcattttgaaaacaaacttcttggctgcatcaacatccttaaagctac |
205 |
Q |
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| T |
50227547 |
ccagtgataacaaaattgaaagcagcatttctaggaggtggaccattagcaatcattttgaaaacaaacttcttggctgcatcaacatccttaaagctac |
50227646 |
T |
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| Q |
206 |
acgacgcttgaaca |
219 |
Q |
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| T |
50227647 |
acgacgcttgaaca |
50227660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 36830187 - 36830018
Alignment:
| Q |
6 |
agcaatagcagaatatgagtatacatctggtttcaaatccctactttcaagtaaactcaacatttccacagcttgtcccatttccccagatttggaataa |
105 |
Q |
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||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
36830187 |
agcaataacagaatacgagtacacatctggtttcaaacccctactttcaagtagcctcaacatctccacagcttgtcccatttccccaactttggaataa |
36830088 |
T |
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| Q |
106 |
ccagtgataacaaaattgaaagtagcatttctaggaggtggaccattagcaatcattttgaaaacaaact |
175 |
Q |
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| T |
36830087 |
ccggtaataacataattgaaaacagcatttccaggaagcggaccatcagcaatcattttcaaaaccaact |
36830018 |
T |
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