View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16335_low_2 (Length: 425)

Name: NF16335_low_2
Description: NF16335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16335_low_2
NF16335_low_2
[»] chr3 (3 HSPs)
chr3 (1-425)||(43610743-43611156)
chr3 (260-421)||(43617628-43617791)
chr3 (319-425)||(43604278-43604384)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 43611156 - 43610743
Alignment:
Q  1 atttgttaagtaggttagtcgctaaaaatccacatttaaggcgagtaagtgggtaatcggggttcaaacgtcagcctttacatgaataatcaatgtccct 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||          
T  43611156 atttgttaagtaggttagtcgctaaaaatccacctttaaggtgagtaagtgggtaatcggggttcaaacgtcatcctttacatgtataatcaat------ 43611063  T
Q  101 atcaattcagctatgctcacgggacatc-atcatcttgcgattctttgaattaaatgtacgatattatgattatgaattacccatatattgacaaaatcc 199  Q
          | || ||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||| |    
T  43611062 ------tgagttatgctcacgggacatccatcatcatgcgattctatgaattaaatgtatgatattatgattatgaattacacatatattgacaaaattc 43610969  T
Q  200 tcaatagattaacataatttatttgactagtttagaggtttggtttaacaaattactccttaatgtcataatttaccctaaattatttaagataatttca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  43610968 tcaatagattaacataatttatttgactagtttagaggtttggtttaacaaattactccttaatgtcataatttatccttaattatttaagataatttca 43610869  T
Q  300 gagtaatttatgattgttcctcaccttcctaaacatagtggctcgcccaagaggaagacagaaccaattgtggcaattataaaactcagtggattccaag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||  ||||||    
T  43610868 gagtaatttatgattgttcctcaccttcctaaacatagtggctcgcccaagagcaagacagaaccgattgtggcaattataaaactcattggggtccaag 43610769  T
Q  400 ttgctgggaaaactggtcctttcttc 425  Q
    ||||||||||||||||||||||||||    
T  43610768 ttgctgggaaaactggtcctttcttc 43610743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 260 - 421
Target Start/End: Complemental strand, 43617791 - 43617628
Alignment:
Q  260 taatgtcataat--ttaccctaaattatttaagataatttcagagtaatttatgattgttcctcaccttcctaaacatagtggctcgcccaagaggaaga 357  Q
    ||||||||||||  ||| ||| ||||||||  ||||| |||||||| ||||||||| ||  ||||||| |||||||| ||||||||||||||||| || |    
T  43617791 taatgtcataatatttatccttaattatttgtgataaattcagagttatttatgatggtaactcacctccctaaacacagtggctcgcccaagagcaaaa 43617692  T
Q  358 cagaaccaattgtggcaattataaaactcagtggattccaagttgctgggaaaactggtccttt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43617691 cagaaccaattgtggcaattataaaactcagtggattccaagttgctgggaaaactggtccttt 43617628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 43604384 - 43604278
Alignment:
Q  319 ctcaccttcctaaacatagtggctcgcccaagaggaagacagaaccaattgtggcaattataaaactcagtggattccaagttgctgggaaaactggtcc 418  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43604384 ctcacctccctaaacgtagtggctcacccaagaggaagacagaaccaattgtggcaattataaaactcagtggattccaagttgctgagaaaactggtcc 43604285  T
Q  419 tttcttc 425  Q
    | |||||    
T  43604284 tctcttc 43604278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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