View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16335_low_3 (Length: 410)
Name: NF16335_low_3
Description: NF16335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16335_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 178 - 399
Target Start/End: Complemental strand, 26216518 - 26216297
Alignment:
| Q |
178 |
agtagttgtcaagcattctagatgtgcattaggaaatgtatgacacaaatcaccatcggtgcgtgctctatcaagttttacctccactgtgtgctctgtg |
277 |
Q |
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| T |
26216518 |
agtagttgtcaagcattctagatgtgcattaggaaatgtttgacacaaatcaccattggtgcgtgctctatccagttttacctccactgtgtgctctgtg |
26216419 |
T |
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| Q |
278 |
ccaataaaatggaaccaagtaaattaatagccttccttgcgcaaatcgaacaacctggaatctgatactgcttgtctaaacctattgatcactcgacttg |
377 |
Q |
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| T |
26216418 |
ccaataaaatggaaccaagtaaattaatagccttccatgcgcaaatcgaacagcctggaatttgatactgcttgtctaaacctattgatcactcgacttg |
26216319 |
T |
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| Q |
378 |
gacagtcaacacatcttttctt |
399 |
Q |
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|||| | ||||||||||||||| |
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| T |
26216318 |
gacaattaacacatcttttctt |
26216297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 26216707 - 26216551
Alignment:
| Q |
20 |
atcatatcagaagcacacatgccaagatgatcaacaatattaactccattttagatatgccaacattgactcaaaatcctcaaagcctggttcttccaac |
119 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26216707 |
atcatatcagaagcacacatgccaagctgatcaacaatattaactccatttgagatatgccaacattgactcaaaatcctcaaagcctggttctgccaac |
26216608 |
T |
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| Q |
120 |
aaagcattttcaaacttgaaccgccgcattgaactcatagaagtcctgatcggatca |
176 |
Q |
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| T |
26216607 |
aaagcattttcaaacttgaaccgccgcgttgaactcatagaagtactgatgggatca |
26216551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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