View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16335_low_8 (Length: 228)
Name: NF16335_low_8
Description: NF16335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16335_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 49934915 - 49935142
Alignment:
| Q |
1 |
ctatttcggatgctcttactaagggatattgtaacatcactcctaggaactaacacagatgttggcacctcattagggaatagactaaaacataccaacc |
100 |
Q |
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| T |
49934915 |
ctatttcggatgctcttactaagggatattgtaacatcactcctaggaactaacagagatgttggcacctcattagggaatagactaaaacataccagcc |
49935014 |
T |
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| Q |
101 |
atttctattcatttcccaacattgcattttctttctttcacaaacgaatccatcttatcaaacatcatttcccgagccgattctctgacaccgagaggaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49935015 |
atttctattcctttcccaacattgcattttctttctttcacgaacgaatccatcttatcaaacatcatttcccgagccgattctctgacaccgagaggaa |
49935114 |
T |
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| Q |
201 |
aaggctgattaatagcacggttctaaac |
228 |
Q |
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| T |
49935115 |
aaggctgattaatagcacggttctaaac |
49935142 |
T |
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