View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16336_high_10 (Length: 310)
Name: NF16336_high_10
Description: NF16336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16336_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 3435809 - 3435518
Alignment:
| Q |
1 |
accaacaaatcagcttcgtcattaataacctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatcta |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3435809 |
accaacaaatcagcttcgtcattaataatctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcaattatcta |
3435710 |
T |
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| Q |
101 |
ccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnnnttccattccatgcttgcaaagaaactccataaattcgaatccgtgcacctccttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |
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| T |
3435709 |
ccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaatttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttc |
3435610 |
T |
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| Q |
201 |
aaatttttaaaatatatattccaattaaaagatactattccacgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataacta |
300 |
Q |
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| T |
3435609 |
aaat--ttaacaca-atctt---------------tattccatgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataacta |
3435528 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 17964234 - 17964370
Alignment:
| Q |
1 |
accaacaaatcagcttcgtcattaataacctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatcta |
100 |
Q |
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||||||||||| || ||| | || |||||||| | ||| |||| || ||||||||||||| | |||||| ||| ||||||| ||||||||| |||| | |
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| T |
17964234 |
accaacaaatctgcgtcggcttttataacctccaaggaagaagctggcaataaaatacgagcgtaatcatacctttctctataaaccgtgcaactatcca |
17964333 |
T |
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| Q |
101 |
ccctcaacaatcgaccaaaatcaaaagcacataatct |
137 |
Q |
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| T |
17964334 |
cccgtaacattcgactaaaatcaaaagcacataatct |
17964370 |
T |
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