View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16336_high_3 (Length: 346)
Name: NF16336_high_3
Description: NF16336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16336_high_3 |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 24565175 - 24564886
Alignment:
| Q |
30 |
agtttttcatatttagtcatcttaatatgtatatctttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24565175 |
agtttttcatatttagtcatcttaatatgtatatctttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtg |
24565076 |
T |
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| Q |
130 |
atctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24565075 |
atctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaatcagtttttcgat |
24564976 |
T |
|
| Q |
230 |
agagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatg |
319 |
Q |
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| T |
24564975 |
agagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatg |
24564886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 14165020 - 14164926
Alignment:
| Q |
116 |
atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
210 |
Q |
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||||||| | ||||||| |||||||| ||||| ||| ||||| ||||||||| |||||||||||||||||| | | ||||||||||||||||||| |
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| T |
14165020 |
atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaataggaaaggagttgagcatcaaggccacattttt |
14164926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 45532934 - 45533168
Alignment:
| Q |
69 |
tacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaaga |
168 |
Q |
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||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
45532934 |
tacaaaggatgtgaacctttgatctgaatttttgtcattcaaatttcatccttaccaaatgatctttattacatttggttttgtagagatagagaaaaga |
45533033 |
T |
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| Q |
169 |
tgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacga |
268 |
Q |
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| T |
45533034 |
tcaagaaataggaaaggagtggggcatcaaggccaca---------------tttttcgatggagaaatggtgacatttcggtgtcggtggtagtgaaga |
45533118 |
T |
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| Q |
269 |
agtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatg |
319 |
Q |
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| T |
45533119 |
agtcacaaagtagtcggtgcggt-aggggccaagtttctaactggaagatg |
45533168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 72 - 296
Target Start/End: Complemental strand, 44339254 - 44339036
Alignment:
| Q |
72 |
aaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatga |
171 |
Q |
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|||||||| ||||||||||| | |||||| |||||| ||||||||||||||| |||||||| | ||||| ||||| ||||||||| ||||||||||||| |
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| T |
44339254 |
aaaggatgtggacctttgatttcgatttttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacagagaaaagatga |
44339155 |
T |
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| Q |
172 |
agaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagt |
271 |
Q |
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||||||||||||||| | | |||||||||||||||||||||| | | ||| | ||||||||| | ||||||||||| ||||| ||| ||||| |
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| T |
44339154 |
agaaataggaaaggaggggagaatcaaggccacatttttcatcagcaactttattgatagagaagtcgagacatttcg------gtggctttgaagaagt |
44339061 |
T |
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| Q |
272 |
cacacagtagtcggtgcagtggggg |
296 |
Q |
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|||| |||||||| ||||||||||| |
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| T |
44339060 |
cacaaagtagtcgatgcagtggggg |
44339036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 72 - 251
Target Start/End: Original strand, 44335720 - 44335899
Alignment:
| Q |
72 |
aaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatga |
171 |
Q |
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|||||||| ||||||||||| | |||||| |||||| ||||||||||||||| |||||||| | ||||| ||||| ||||||||| |||||||||||| |
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| T |
44335720 |
aaaggatgtggacctttgattttgatttttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacggagaaaagatga |
44335819 |
T |
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| Q |
172 |
agaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggt |
251 |
Q |
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| T |
44335820 |
agaaataggaaaggaggggagcatcaaggccacatttttcatcagcaactttattgatagagaagtcgagacatttcggt |
44335899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 29633314 - 29633485
Alignment:
| Q |
81 |
ggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaatagg |
180 |
Q |
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|||||||| || || |||||| |||||| |||| || |||| | ||||||| |||||||| ||||| ||| |||| | |||||| || |||||||||| |
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| T |
29633314 |
ggacctttaatctggatttttatcattccaattctattcttagcaagtgatcgttattacacttggtcttgaagaggcaaagaaaatataaagaaatagg |
29633413 |
T |
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| Q |
181 |
aaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtg |
252 |
Q |
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||| || ||||| ||||| |||| ||||||| | |||||||| |||||| ||||||| || |||| |||| |
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| T |
29633414 |
aaacgagtagggtatcaatgccatgtttttcaactgccagttttgcgatagggaaatggggatattttggtg |
29633485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 40389260 - 40389416
Alignment:
| Q |
96 |
atttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcat |
195 |
Q |
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|||||| |||||| |||| || |||| | ||||||| |||||||| ||| | ||| |||| | |||||| || ||||||||||||| || ||||| || |
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| T |
40389260 |
atttttatcattccaattctattcttagcaagtgatcgttattacacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtat |
40389359 |
T |
|
| Q |
196 |
caaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtg |
252 |
Q |
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||| |||| ||||||| | |||||||| ||||| ||||||| ||||||| |||| |
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| T |
40389360 |
caatgccatgtttttcaactgccagttttgcgatatggaaatggggacattttggtg |
40389416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 16257 - 16351
Alignment:
| Q |
116 |
atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
210 |
Q |
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||||||| | ||||||| |||||||| ||||| ||| ||||| ||||||||| ||||||||||| |||||| | | ||||||||||||||||||| |
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| T |
16257 |
atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaatagaaaaggagttgagcatcaaggccacattttt |
16351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 23096260 - 23096176
Alignment:
| Q |
126 |
agtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt |
210 |
Q |
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||||||| |||||||| ||||| ||| |||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||| |
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| T |
23096260 |
agtgatcattattacacttggttttgaagagatggagaaaaggtgaagaaataggaaaggggtggggcatcaaggctacattttt |
23096176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 24867524 - 24867465
Alignment:
| Q |
127 |
gtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaagga |
186 |
Q |
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||||| ||||||| | ||||| ||||||||| || ||||||| ||||||||||||||||| |
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| T |
24867524 |
gtgatttttattagacttggttttgtagagacagtgaaaagaagaagaaataggaaagga |
24867465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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