View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16336_high_4 (Length: 343)
Name: NF16336_high_4
Description: NF16336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16336_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 343
Target Start/End: Complemental strand, 40553071 - 40552735
Alignment:
| Q |
6 |
ggatcaaccgaggaagtgcatccatcacaagcttttctatgagatacgggcgatcagctaaaaatgattctttgtctagcactagaggatcattctgatt |
105 |
Q |
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| T |
40553071 |
ggatcaaccgaggaagtgcatccatcgcaagcttttctatgagatacgggcgatcagctaaaaatgattctttgtctagcactagaggatcattctgatt |
40552972 |
T |
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| Q |
106 |
ttcagtcacctcaggaagaagcacatttagcagcttgagcacttcatatccctagcaagaaagaaacatccccaaattattctcttactacaaataagaa |
205 |
Q |
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| T |
40552971 |
ttcagtcacctcaggaagaagcacatttagcagcttgagcacttcatatccctagcaagaaagaaacatccccaaattattctcttactacaaataagaa |
40552872 |
T |
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| Q |
206 |
aactcacaattcatacatgcttaannnnnnngtacaagggtattactaagaaaataaaatcacttataacaactgctattcagaatgaaactaaccatag |
305 |
Q |
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| T |
40552871 |
aactcacaattcatacatgcttaa-ttttttgtacaagggtattactaagaaaataaaatcacttataacaactgctattcagaatgaaaccaaccatag |
40552773 |
T |
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| Q |
306 |
tcataaaaataaataaatcttttgacccaccaaatata |
343 |
Q |
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| T |
40552772 |
tcataaaaataaataaatcttttgacccaccaaatata |
40552735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 22137753 - 22137708
Alignment:
| Q |
298 |
aaccatagtcataaaaataaataaatcttttgacccaccaaatata |
343 |
Q |
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| T |
22137753 |
aaccatagtcataaaaataaataaatcttttgacccaccaaatata |
22137708 |
T |
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