View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16336_high_7 (Length: 335)
Name: NF16336_high_7
Description: NF16336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16336_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 100 - 307
Target Start/End: Original strand, 28275966 - 28276173
Alignment:
| Q |
100 |
ctttctcctagaatggcttgagccatgtattaggcttgaggcaaatacatttttacttttgtacatatgaatgtgacaaattaagcttgggaatgtagac |
199 |
Q |
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| T |
28275966 |
ctttctcctagaatggcttgagccatgtattagggttggggcaaatacatttttacttttgtacatatgaatgtgacaaattaagcttgggaatgtagac |
28276065 |
T |
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| Q |
200 |
tatgctttgttaggcggaatgtgcattgcatttatttgtgaaatcaaatgttatgtttatgttatgccatgtaatactccatatgtgtcgtattctttta |
299 |
Q |
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| T |
28276066 |
tatgctttgttaggcggaatgtgcattgcatttatttgtgaaatgaaatgttatgtttatgttatgccatgtaatactccatatgtgtcgtattctttta |
28276165 |
T |
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| Q |
300 |
cttatgtt |
307 |
Q |
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| T |
28276166 |
cttatgtt |
28276173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 28275908 - 28275940
Alignment:
| Q |
38 |
cacactcagaaaagtttgatgacatagacgtct |
70 |
Q |
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| T |
28275908 |
cacactcagaaaagtttgatgacatagacgtct |
28275940 |
T |
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