View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16336_low_1 (Length: 260)
Name: NF16336_low_1
Description: NF16336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16336_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 155099 - 155329
Alignment:
| Q |
16 |
gtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtc |
115 |
Q |
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| T |
155099 |
gtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtc |
155198 |
T |
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| Q |
116 |
cactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgacagaacatcacggatttccagtagttgatgagcctccttt |
215 |
Q |
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| T |
155199 |
cactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgacagaacatcacggatttccagtagttgatgagcctccttt |
155298 |
T |
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| Q |
216 |
gacggatgctccggagttgtgtgggttggtg |
246 |
Q |
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| T |
155299 |
gacggatgctcccgagttgtgtgggttggtg |
155329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 56469455 - 56469226
Alignment:
| Q |
16 |
gtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtc |
115 |
Q |
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| T |
56469455 |
gtttatgatcaaatagtggaaatgaaggggttgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtttctggtc |
56469356 |
T |
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| Q |
116 |
cactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgacagaacatcacggatttccagtagttgatgagcctccttt |
215 |
Q |
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| T |
56469355 |
cactgtttacattctctggtattgaaaaagtggggaatattgtgcacactttaaaggtgacgcgacataatgggtttcctgtgattgatgagcctccatt |
56469256 |
T |
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| Q |
216 |
gacggatgctccggagttgtgtgggttggt |
245 |
Q |
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| T |
56469255 |
cttagaagctccagagttatgtgggttggt |
56469226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 24329234 - 24329119
Alignment:
| Q |
43 |
ggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaa |
142 |
Q |
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||||| |||||| ||||||||||||| || || |||||||||||| ||| | || | |||||||| || |||||| || | | |||| ||| ||||||| |
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| T |
24329234 |
ggacttccttatttggaagcacatgccgaaccttacatgaggaatatagctacacgtgatgttgtctcgggtccattgatgaccttttctggcatcgaaa |
24329135 |
T |
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| Q |
143 |
aagtggggaatatatt |
158 |
Q |
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| T |
24329134 |
aggttgggaatatatt |
24329119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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