View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16337_low_2 (Length: 291)

Name: NF16337_low_2
Description: NF16337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16337_low_2
NF16337_low_2
[»] chr2 (4 HSPs)
chr2 (17-273)||(28736564-28736820)
chr2 (17-273)||(28713290-28713546)
chr2 (17-219)||(28743244-28743446)
chr2 (17-273)||(28786119-28786375)
[»] chr8 (9 HSPs)
chr8 (23-231)||(2032835-2033043)
chr8 (20-273)||(10767471-10767724)
chr8 (17-216)||(2022146-2022345)
chr8 (173-218)||(1950499-1950544)
chr8 (173-218)||(2028449-2028494)
chr8 (161-220)||(2050214-2050273)
chr8 (23-92)||(1950628-1950697)
chr8 (23-92)||(2028299-2028368)
chr8 (23-92)||(2050076-2050145)
[»] chr4 (1 HSPs)
chr4 (20-88)||(48908893-48908961)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 28736820 - 28736564
Alignment:
Q  17 gagacatggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtgattagattctttgaacaagatactg 116  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  28736820 gagacatggggtttctttcaagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatattg 28736721  T
Q  117 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28736720 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac 28736621  T
Q  217 ttttatatgtgactttgcacttaatgcccccaaactagaagatttgccagtagtatg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28736620 ttttatatgtgactttgcacttaatgcccccaaactagaagatttgccagtagtatg 28736564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 28713546 - 28713290
Alignment:
Q  17 gagacatggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtgattagattctttgaacaagatactg 116  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||    
T  28713546 gagacatggggtttctttcaagtgattaatcatggtattcctttgaatgttcttgaagatatgaaagatggagtgaagagattctttgaacaagatactg 28713447  T
Q  117 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  28713446 aagtgaagaaagagatgtatactagagatcgaacaaggccattggtttataatagcaattttgatttgtatagatcaccagcacttaattggagggatac 28713347  T
Q  217 ttttatatgtgactttgcacttaatgcccccaaactagaagatttgccagtagtatg 273  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  28713346 ttttatatgtgactttgctgttaatgcctccaaactagaagatttgccagtagtatg 28713290  T

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Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 28743446 - 28743244
Alignment:
Q  17 gagacatggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtgattagattctttgaacaagatactg 116  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28743446 gagacatggggtttctttcaagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatactg 28743347  T
Q  117 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28743346 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatac 28743247  T
Q  217 ttt 219  Q
    |||    
T  28743246 ttt 28743244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 28786375 - 28786119
Alignment:
Q  17 gagacatggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtgattagattctttgaacaagatactg 116  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||  ||    
T  28786375 gagacatggggtttctttcaagtggtcaatcatggcattcctttgaatgttcttgaggatatgagaaatggagtgattagattctttgaacaagatgttg 28786276  T
Q  117 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac 216  Q
    ||||||| |||||| | ||| || | |||| ||  ||||||||    || ||||| |||||| || | ||||||||| ||||||| ||||||||||||||    
T  28786275 aagtgaaaaaagagttatattctcgtgatccaatgaggccattttcatacaatagcaattttaatctttatagttcatcagcactcaattggagggatac 28786176  T
Q  217 ttttatatgtgactttgcacttaatgcccccaaactagaagatttgccagtagtatg 273  Q
    |||| | |||  ||| || | |||||| || |||| | |||| |||||| |||||||    
T  28786175 ttttgtgtgttccttggctcctaatgctcctaaaccacaagacttgccactagtatg 28786119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 2032835 - 2033043
Alignment:
Q  23 tggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtgattagattctttgaacaagatactgaagtga 122  Q
    |||||||| || ||||| ||||||||||| || ||| ||| ||||||||||||  ||||||||||||| |  || || | |||||| ||||| ||||| |    
T  2032835 tggggttttttccaagttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtca 2032934  T
Q  123 agaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatacttttat 222  Q
    | |||||  ||||||||||| ||   |  ||  | || ||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||| ||||||    
T  2032935 aaaaagaattgtatactagaaatagcaatagatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggatagttttat 2033034  T
Q  223 atgtgactt 231  Q
     ||| ||||    
T  2033035 gtgttactt 2033043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 10767471 - 10767724
Alignment:
Q  20 acatggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtgattagattctttgaacaagatactgaag 119  Q
    |||||||| || |||||||| ||||||||||| || ||| ||| ||||||||||||  ||||||||||||| |  || || | ||| || ||||| ||||    
T  10767471 acatgggggttttttcaagttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggtgttaagaggttttatgagcaggatacagaag 10767570  T
Q  120 tgaagaaagagatgtatactagagatcaa-acaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatactt 218  Q
    | || |||||  ||||||| ||||||  | | ||  || ||  |||| |||||||| |||||| | ||||| ||||||||||||||||||||||||||||    
T  10767571 tcaaaaaagatttgtatacaagagatagacataaatccttta-tttacaatagtaactttgatatttatagctcaccagcacttaattggagggatactt 10767669  T
Q  219 ttatatgtgactttgcacttaatgcccccaaactagaagatttgccagtagtatg 273  Q
    ||| |||| |||| || | | || | ||||||| ||||||| | || ||||||||    
T  10767670 ttacatgttacttggctcctgatactcccaaaccagaagatattcctgtagtatg 10767724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 2022146 - 2022345
Alignment:
Q  17 gagacatggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtgattagattctttgaacaagatactg 116  Q
    ||||||||||||||||||||| | ||||||||||||||     ||| |||| | || || |||||  |||| ||| ||||||||||||| |||||| |||    
T  2022146 gagacatggggtttctttcaaattgttaatcatggtatagaagtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctg 2022245  T
Q  117 aagtgaagaaagagatgtatactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac 216  Q
    | ||||| | |||  | || ||  | |||| |   | ||| |||||||||||||||||||||||| | ||||||||||||||   || ||||||||||||    
T  2022246 aggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac 2022345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 1950544 - 1950499
Alignment:
Q  173 aattttgatttgtatagttcaccagcacttaattggagggatactt 218  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  1950544 aattttgatttgtatagctcaccagcactcaattggagggatactt 1950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 2028449 - 2028494
Alignment:
Q  173 aattttgatttgtatagttcaccagcacttaattggagggatactt 218  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  2028449 aattttgatttgtatagctcaccagcactcaattggagggatactt 2028494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 2050214 - 2050273
Alignment:
Q  161 gtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatactttt 220  Q
    ||||||||||||||||||||| | ||||| || || ||||| ||||||||||||| ||||    
T  2050214 gtttataatagtaattttgatatttatagctctccggcactcaattggagggatagtttt 2050273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 1950697 - 1950628
Alignment:
Q  23 tggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtga 92  Q
    ||||| || ||||| || ||||||||||| || ||| ||| |||||||||||| ||||| ||||||||||    
T  1950697 tgggggttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagatgaaggatggtgtga 1950628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 2028299 - 2028368
Alignment:
Q  23 tggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtga 92  Q
    ||||| || ||||| || ||||||||||| || ||| ||| |||||||||||| ||||| ||||||||||    
T  2028299 tgggggttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagatgaaggatggtgtga 2028368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 2050076 - 2050145
Alignment:
Q  23 tggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggtgtga 92  Q
    |||||||| ||||| || ||||||||||| || ||| ||| ||||||||||||  |||||||||| ||||    
T  2050076 tggggtttttttcaggttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggggtga 2050145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 48908961 - 48908893
Alignment:
Q  20 acatggggtttctttcaagtggttaatcatggtattcctctgaatgttcttgaggatatgaaagatggt 88  Q
    ||||||||||| ||||| || ||||||||||| || ||| ||||  ||||||||||  |||||||||||    
T  48908961 acatggggtttttttcaggttgttaatcatggaatccctttgaacattcttgaggaattgaaagatggt 48908893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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