View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16337_low_3 (Length: 287)
Name: NF16337_low_3
Description: NF16337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16337_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 3140209 - 3140476
Alignment:
| Q |
6 |
aggaacacagactgcctattatgggtccagagaggctacaagaagtaggttcatatctcacgttagaaactatggagaaaatgattcgcccgttcgccat |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3140209 |
aggagcacacactgcctattatgggtccagagaggctacaagaagtaggttcatatctcacgttagaaactatggagaaaatgattcgcccgttcgccat |
3140308 |
T |
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| Q |
106 |
gcctgcagaagactttccaccagcaacacctgcaggattttctggctatttcacaaaaagcatgcttgagcgtctggtaaatctttggccgttccataag |
205 |
Q |
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| T |
3140309 |
gcctgcagaagactttccaccagcaacacctgcaggattttctggctatttcacaaaaagcatgcttgagcgtctggtaaatctttggccgttccataag |
3140408 |
T |
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| Q |
206 |
cactagcagaaaatagtaaacttggaaatattcttcctccttctgtttgatcttcttgtctcattttt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3140409 |
cactagcagaaaatagtaaacttggaaatattcttcctccttctgtttgatcttcttgtctcattttt |
3140476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 1933443 - 1933647
Alignment:
| Q |
6 |
aggaacacagactgcctattatgggtccagagaggctacaagaagtaggttcatatctcacgttagaaactatggagaaaatgattcgcccgttcgccat |
105 |
Q |
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||||||||| ||| |||||||||||||| || |||||||||||| | ||||||| |||||||||||||| ||||||| ||| || | || || || || |
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| T |
1933443 |
aggaacacacacttcctattatgggtcctgaaaggctacaagaaattggttcatgtctcacgttagaaaaaatggagatgatgttttgtccatttgctat |
1933542 |
T |
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| Q |
106 |
gcctgcagaagactt---tccaccagcaacacctgcaggattttctggctatttcacaaaaagcatgcttgagcgtctggtaaatctttggccgttccat |
202 |
Q |
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| T |
1933543 |
gcctgcagaagacttccctccaccagcaacaccagcaggattctccggctatttctcaaaaagcgtactcgagcgtctagtaaatctttggccttttcat |
1933642 |
T |
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| Q |
203 |
aagca |
207 |
Q |
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||||| |
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| T |
1933643 |
aagca |
1933647 |
T |
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