View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16337_low_5 (Length: 208)
Name: NF16337_low_5
Description: NF16337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16337_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 36013150 - 36012979
Alignment:
| Q |
19 |
atatcagattctctatgaatatatacacacatacaaaatctgaaaccatatattattatccttattctctattttgaaaggcatatcctttaagatgttt |
118 |
Q |
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| T |
36013150 |
atatcagattctctatgaatatatacacacatacaaaatctgaaaccatatattattatccttattctctattttgaaaggcatatcctttaagatgttt |
36013051 |
T |
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| Q |
119 |
catccttgtaaaataatttcactttatattgtccatctatttgtttttcagttgcgcaactgaagcaggata |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36013050 |
catccttgtaaaataatttcactttatattgtccatctatttgtttttcagttgcgcaactgaagctggata |
36012979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 36007289 - 36007236
Alignment:
| Q |
21 |
atcagattctctatgaatatatacacacatacaaaatctgaaaccatatattat |
74 |
Q |
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|||| ||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
36007289 |
atcatattctctgtaaatatatacacacatacaaaatctaaaaccatatattat |
36007236 |
T |
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