View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16338_high_2 (Length: 423)
Name: NF16338_high_2
Description: NF16338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16338_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 33 - 422
Target Start/End: Original strand, 32596599 - 32597015
Alignment:
| Q |
33 |
ccctagtttgtgacggg-ctaggtatttggctagtccagaacataagtcatcggttcgaggtgttcgaagtgatgacttcaaatgatgatgagtaaaaaa |
131 |
Q |
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| T |
32596599 |
ccctagtttgtggcggggctaggtatttggctagtccagaacataagtcatcggttcgaggtgttcgaagtgatgacttcaaatgatgatgagtaaaaaa |
32596698 |
T |
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| Q |
132 |
ggggatgtcggt------------ctaactgtgttagaagcg---------------ttgttatattttgagttcgacttgaagaatacattgcaaaata |
204 |
Q |
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| T |
32596699 |
ggggatgtcggtggggatgtcagtctaactgtgttagaagcgacctgaagaagatcgttgttatattttgagttcgacttgaagaatacattgcaaaata |
32596798 |
T |
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| Q |
205 |
tgtcaagtctactcaataccaagttggataatgtttgctggaaaccccattctacggtctcaccctctctccttgtttagttgcttgaaagggtgtaaat |
304 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
32596799 |
tgtcatgtctactcaataccaagttggataatgtttgctggaaaccccattctacggtctcaccctgtctccttgtttagttgcttg-aagggtgtaaat |
32596897 |
T |
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| Q |
305 |
gtagtctcagtctgtggtataaaatagtgtataaggtgtccaccctctctcctagttaaatggagagattacaatttgtacaagtgctcaatgtatacat |
404 |
Q |
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| T |
32596898 |
gtagtctcagtctgtggtataaaatagtgtatatggtgtccaccctctctcctagttacatggagaaattacaatttgtacaagtgctcaatgtatacat |
32596997 |
T |
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| Q |
405 |
aagatgtatcactctaaa |
422 |
Q |
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| T |
32596998 |
aagatgtatcactctaaa |
32597015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 28355253 - 28355334
Alignment:
| Q |
76 |
aagtcatcggttcgaggtgttcgaagtgatgacttcaaatgatgatgagtaaaaaaggggatgtcggtctaactgtgttagaa |
158 |
Q |
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| T |
28355253 |
aagtcatcagttcgaagtgtt-gaagtgataatttaaaatgatgacgagcaaaaaaggggatgtcgatttgattgtgttagaa |
28355334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 32667147 - 32667189
Alignment:
| Q |
188 |
gaatacattgcaaaatatgtcaagtctactcaataccaagttg |
230 |
Q |
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| T |
32667147 |
gaatacattacaaaatatgtcaagtctacacaatacaaagttg |
32667189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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