View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16339_high_1 (Length: 441)
Name: NF16339_high_1
Description: NF16339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16339_high_1 |
 | |
|
| [»] scaffold0126 (1 HSPs) |
| | |
|
| [»] scaffold0218 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0661 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0126 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 12 - 440
Target Start/End: Original strand, 12816 - 13244
Alignment:
| Q |
12 |
ctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttattttta |
111 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
12816 |
ctccacaacatcttcatcaaccttctttggaacttttggaactaaaggtgtcaaaaccttcttgctcctcaactcaatagcattgcaagtctcattttta |
12915 |
T |
|
| Q |
112 |
gggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggctt |
211 |
Q |
| |
|
||||||| | |||||||| ||||||||||| ||||||| |||| ||||||||||||||| ||| |||| |||||||| ||||||||||| |||| |
|
|
| T |
12916 |
gggttctcgtcggtgttaccagagaatccccccttgttctgttcaatcaactgcttagctaattgcccaagttgggtttcaagaaatttccttgaagctt |
13015 |
T |
|
| Q |
212 |
cattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaagg |
311 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13016 |
cgttgttcttcctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaagg |
13115 |
T |
|
| Q |
312 |
ctttcttggttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcatacctgaatta |
411 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
13116 |
ctttcttggttgttgttgttaatgcggattaggaatcaaaggattcaatgtgttgttgttggagtaactcagtttagggtgcttgttcattcctgaatta |
13215 |
T |
|
| Q |
412 |
tagtaagggttttgcctttgctacttcac |
440 |
Q |
| |
|
||||||||||| |||||||| || ||||| |
|
|
| T |
13216 |
tagtaagggttctgcctttgataattcac |
13244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 13844399 - 13843980
Alignment:
| Q |
12 |
ctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttattttta |
111 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
13844399 |
ctccataacatcttcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattgcaagtctcattttta |
13844300 |
T |
|
| Q |
112 |
gggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggctt |
211 |
Q |
| |
|
||||||| || |||||||| ||||||||||| ||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||| |
|
|
| T |
13844299 |
gggttctcctgggtgttacctgagaatccccccttgttttgttcagccaactgcttagctaattgcccaagttgtgtttcaagcaatttccttaaagctt |
13844200 |
T |
|
| Q |
212 |
cattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaagg |
311 |
Q |
| |
|
|||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
13844199 |
cattattcttcctttcaatatcttgacttttcttcatttcctcaaaattaccttgagtcattttcatgaagttcatcattgtcttttcaagaccggaagg |
13844100 |
T |
|
| Q |
312 |
ctttcttggttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcatacctgaatta |
411 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
13844099 |
ctttcttggttgttgttgttgttgcggattaggaatcaaaggattcaatgtgctgttgttggagtaactcaggttagggtgcttgttcattcctgaatta |
13844000 |
T |
|
| Q |
412 |
tagtaagggttttgcctttg |
431 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
13843999 |
tagtaagagttttgcctttg |
13843980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 26144104 - 26144310
Alignment:
| Q |
12 |
ctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttattttta |
111 |
Q |
| |
|
||||||||| | |||||||| ||| | ||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||| ||||||| ||| ||| |
|
|
| T |
26144104 |
ctccacaacattttcatcaactttcgtgggaacttttggaactaaaggtgtcagaaccttcttgctccttaactcaataacattgcaagtttcattctta |
26144203 |
T |
|
| Q |
112 |
gggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggctt |
211 |
Q |
| |
|
|| |||| | ||| ||||| ||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
26144204 |
ggattctcttgagtattacctgagaatctccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcatttttcttgaggctt |
26144303 |
T |
|
| Q |
212 |
cattgtt |
218 |
Q |
| |
|
||||||| |
|
|
| T |
26144304 |
cattgtt |
26144310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 2573319 - 2573375
Alignment:
| Q |
33 |
cttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaat |
89 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
2573319 |
cttctttgtgacttttggaactaaaggtgttaaaaccttcttgctcctcaactcaat |
2573375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 10305080 - 10305136
Alignment:
| Q |
33 |
cttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaat |
89 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
10305080 |
cttctttgtgacttttggaactaaagttgttaaaaccttcttgctcctcaactcaat |
10305136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 2594961 - 2595016
Alignment:
| Q |
34 |
ttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaat |
89 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
2594961 |
ttctttgtgacttttggaactaaaggtgttaaaactttcttgctcctcaactcaat |
2595016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 12419 - 11995
Alignment:
| Q |
16 |
acaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggt |
115 |
Q |
| |
|
||||| || ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
12419 |
acaacttcttcatcaaccttcttttgacttcttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattgcaagtctcatttttagggt |
12320 |
T |
|
| Q |
116 |
tcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcatt |
215 |
Q |
| |
|
||| |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12319 |
tctccttagtattacctgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcaatttccttgaggcttcatt |
12220 |
T |
|
| Q |
216 |
gttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggcttt |
315 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
12219 |
gtttttcctttcaatatcttgacttttcttcatttcttcaaagttaccttgagccatcttcatcaaattcatcattgtctcttcaagaccggaaggcttt |
12120 |
T |
|
| Q |
316 |
cttggttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcatacctgaattatagt |
415 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
12119 |
ctttgttgttgttgttgttgaggattaggcatcaaaggattcaaggtattgtcgttggagtaactcaagttagggtgcttgttcaagcctgaattatagt |
12020 |
T |
|
| Q |
416 |
aagggttttgcctttgctacttcac |
440 |
Q |
| |
|
| ||||||||||||| || ||||| |
|
|
| T |
12019 |
agaggttttgcctttgatagttcac |
11995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 440
Target Start/End: Complemental strand, 20966473 - 20966033
Alignment:
| Q |
4 |
tcatccatctccacaacgtcctcatcaaccttctttggaacttttggaactaa----aggtgtcaaaacctttttgctcctcaactcaatagcattacaa |
99 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20966473 |
tcatctatctccacaacattttcatcaaccttctttggaactttttgaactaattaaaggtgtcaaaacctttttgctcctcaactcaatagcattgcaa |
20966374 |
T |
|
| Q |
100 |
gttttatttttagggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatt |
199 |
Q |
| |
|
|| | ||||||||||||| | ||||||||| || ||||||| |||||||| |||| ||||||||||| |||| ||| ||||||||||||| |||| |
|
|
| T |
20966373 |
gtctcatttttagggttcacatgagtgttacctgaaaatccccttttgttctgttcatccaactgcttacctaattgcccaagttgtgtttcaagtaatt |
20966274 |
T |
|
| Q |
200 |
tccttgaggcttcattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttc |
299 |
Q |
| |
|
|| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20966273 |
tcattgaggcttcattgttcttcctttcaatatcttgacttttcttcatttcctgaaagttaccttgagtcatcttcatgaagttcatcattgtctcttc |
20966174 |
T |
|
| Q |
300 |
aagaccagaaggctttcttggttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttc |
399 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20966173 |
aagaccggaaggttttcttggttgttgttgttgttgcggattaggaatcaaaggattcaatgtgttgttgttggagtaactcaggttagggtgcttgttc |
20966074 |
T |
|
| Q |
400 |
atacctgaattatagtaagggttttgcctttgctacttcac |
440 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
20966073 |
attcctgaattatagtaagggttttgcgtttgataattcac |
20966033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 401
Target Start/End: Original strand, 16846997 - 16847373
Alignment:
| Q |
25 |
tcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttag |
124 |
Q |
| |
|
|||||||| || || ||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||| | || |
|
|
| T |
16846997 |
tcatcaactttattgggaacctttggaactaaaggtgccaaaacctttttactcctcaactcaataacattgcaagtttcatttttagggttctcttgag |
16847096 |
T |
|
| Q |
125 |
tgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttct |
224 |
Q |
| |
|
| || |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||| || || |
|
|
| T |
16847097 |
tatttcccgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcattttccgtgaggcttcattgttcttcct |
16847196 |
T |
|
| Q |
225 |
ttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgt |
324 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || |||| ||| | |||||| ||||||||| |
|
|
| T |
16847197 |
ttcaaggtcttgactcttcttcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaatacctggaggcttccttggttgt |
16847296 |
T |
|
| Q |
325 |
tgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
16847297 |
tgttgttgttgtggattaggaaacaagggatttaaggtgttgttgttggagtaactcaagttagggtgcttattcat |
16847373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 22238843 - 22238899
Alignment:
| Q |
33 |
cttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaat |
89 |
Q |
| |
|
|||||||| |||||| | ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
22238843 |
cttctttgtgactttttgtactaaaggtgttaaaaccttcttgctcctcaactcaat |
22238899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 401
Target Start/End: Original strand, 24901701 - 24902077
Alignment:
| Q |
25 |
tcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttag |
124 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||| |
|
|
| T |
24901701 |
tcatcatccttcttaggaactttaggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattgcaagtctcatttttagggttctccttag |
24901800 |
T |
|
| Q |
125 |
tgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttct |
224 |
Q |
| |
|
| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
24901801 |
tattacctgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcaatttccttgaggcttcattgttcttcct |
24901900 |
T |
|
| Q |
225 |
ttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgt |
324 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||| ||| | ||||||||| |||||||| ||||||||||| || |||||||| |||||||||||| ||||| |
|
|
| T |
24901901 |
ttcaagatcttgactcttcttcatttcttcaatgttgctttgagtcattttcatgaaattcatcattgtttcctcaagacctgaaggctttctttgttgt |
24902000 |
T |
|
| Q |
325 |
tgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24902001 |
tgttgttgttgaggattaggcatcaaaggatttaaggtgttgttgttggagtaactcaagttagggtgcttgttcat |
24902077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 25 - 401
Target Start/End: Complemental strand, 24437011 - 24436635
Alignment:
| Q |
25 |
tcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttag |
124 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||| | || |
|
|
| T |
24437011 |
tcatcaactttattgggaacttttggaactaaaggtgtcaaaacctttttactcctcaactcaataacattgcaagtttcatttttagggttctcttgag |
24436912 |
T |
|
| Q |
125 |
tgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttct |
224 |
Q |
| |
|
| || || ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
24436911 |
tatttcctgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcattttccttgaggcttcattgttcttcct |
24436812 |
T |
|
| Q |
225 |
ttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgt |
324 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || ||||||| | |||||||||||||||| |
|
|
| T |
24436811 |
ttcaaggtcttgactcttcttcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaagacttggaggctttcttggttgt |
24436712 |
T |
|
| Q |
325 |
tgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
24436711 |
tgttgttgttgtggattaggaaacaagggatttaaggtgttgttgttggagtaactcaagttagggtgcttattcat |
24436635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 25 - 401
Target Start/End: Complemental strand, 14703884 - 14703505
Alignment:
| Q |
25 |
tcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttag |
124 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||| |
|
|
| T |
14703884 |
tcatcatccttcttaggaactttaggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattgcaagtctcatttttagggttctccttag |
14703785 |
T |
|
| Q |
125 |
tgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttct |
224 |
Q |
| |
|
| ||||| ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
14703784 |
tattacctgagaatccccctttgttctgttctgccaactgcttagctaattgcccaagttgtgtttcaagcattttccttgaggcttcattgttcttcct |
14703685 |
T |
|
| Q |
225 |
ttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttg---gt |
321 |
Q |
| |
|
||||| | |||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || |||||||| |||||||||||| || |
|
|
| T |
14703684 |
ttcaagtttttgactcttcttcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaagacctaaaggctttcttggttgt |
14703585 |
T |
|
| Q |
322 |
tgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14703584 |
tgttgttgttgttgaggattaggcatcaaaggatttaaggtgttgttgttggagtaactcaagttagggtgcttgttcat |
14703505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 32 - 401
Target Start/End: Complemental strand, 21255 - 20887
Alignment:
| Q |
32 |
ccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttagtgttacc |
131 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| || ||| ||||| |
|
|
| T |
21255 |
ccttcttaggaactttaggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattgcaagtctcatttttagggttctcctaagtattacc |
21156 |
T |
|
| Q |
132 |
cgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttctttcaata |
231 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||| | | ||||||||||||||| ||||||||||||||||||||| || ||||||| |
|
|
| T |
21155 |
tgagaatccccctttgttctgttcagacaactgcttggctaatttcccaagttgtgtttcaagcattttccttgaggcttcattgttcttcctttcaagg |
21056 |
T |
|
| Q |
232 |
tcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgttgttgtt |
331 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
21055 |
tcttgactcttcttcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaagacctgaaggctttcttggttgttgttgtt |
20956 |
T |
|
| Q |
332 |
gttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20955 |
gttga-gattaggcatcaaaggatttaaggtattgttgttggagtaactcaagttagggtgcttgttcat |
20887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 48852 - 48424
Alignment:
| Q |
12 |
ctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttattttta |
111 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| || ||| ||| |
|
|
| T |
48852 |
ctccacaacttcttcatcaactttctttggaacttttggaactaaaggtgtgaaaacctttttgctccttaactcaatagcattgtaagattcattctta |
48753 |
T |
|
| Q |
112 |
gggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggctt |
211 |
Q |
| |
|
| ||| | ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
48752 |
gagttttctttagtattacctgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcatcttccttgaggctt |
48653 |
T |
|
| Q |
212 |
cattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaagg |
311 |
Q |
| |
|
||||||| ||||||| | ||||||||| ||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||| |||||| | ||||| |
|
|
| T |
48652 |
cattgttctttcttttagcatcttgactcttcttcatttcctcaaagttaccttaagtcaatttcatgaaattgatcatagtctcctcaagagctgaagg |
48553 |
T |
|
| Q |
312 |
ctttcttggttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcatacctgaatta |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || ||| ||||||||||| ||||| ||||||||||| ||||||| |||||| | ||||||||| |
|
|
| T |
48552 |
ctttcttggttgttgttgttgttgaggattaggtagcagagggttcaaggtgtttttgttagagtaactcaggttagggttcttgttaaagcctgaatta |
48453 |
T |
|
| Q |
412 |
tagtaagggttttgcctttgctacttcac |
440 |
Q |
| |
|
|||||||||||||| ||||| || ||||| |
|
|
| T |
48452 |
tagtaagggttttgactttgatagttcac |
48424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 24402187 - 24401796
Alignment:
| Q |
10 |
atctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttt |
109 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||| |
|
|
| T |
24402187 |
atctctacaacttcatcatcaaccttctttggaacttttggaactaaaggtgtcaaaaccttttttctcctcaactcaatagcattgcaagtctcgtttt |
24402088 |
T |
|
| Q |
110 |
tagggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggc |
209 |
Q |
| |
|
||||||||| |||||| |||| ||||||||||||||||||| |||||| ||||| |||||||| ||| |||| |||||||| |||||||||||||| |
|
|
| T |
24402087 |
tagggttctccttagtattactggagaatccccctttgttctgttcagcaaactgattagctaattgcccaagttgagtttcaagaaatttccttgaggc |
24401988 |
T |
|
| Q |
210 |
ttcattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaa |
309 |
Q |
| |
|
|||||| || || |||||||| |||||| |||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||| ||||| ||| | ||| |
|
|
| T |
24401987 |
ttcattattcttcctttcaatgtcttgatttttcttcatatcctcaaagttactttgagtcatcgtcatgaaattcatcattgtttcttccagagctgaa |
24401888 |
T |
|
| Q |
310 |
ggctttcttggttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
|| || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| || ||||| |
|
|
| T |
24401887 |
ggtttccatggttgttgttgttgttgaggattaggcatcaacggattcaaggtgttgttgttagagtaactcaagttagggtgtttcttcat |
24401796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 401
Target Start/End: Complemental strand, 22922525 - 22922133
Alignment:
| Q |
12 |
ctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttattttta |
111 |
Q |
| |
|
||||||||| | |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
22922525 |
ctccacaacattttcatcaactttattgggaacttttggaactaaaggtgtcaaaacctttttactcctcaactcaataacattgcaagtttcattttta |
22922426 |
T |
|
| Q |
112 |
gggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggctt |
211 |
Q |
| |
|
|||||| | ||| || || ||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||| |
|
|
| T |
22922425 |
aggttctcttgagtatttcctgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagctgtgtttcaagcattttccttgaggctt |
22922326 |
T |
|
| Q |
212 |
cattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaagg |
311 |
Q |
| |
|
||||||| || ||||||| ||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || |||||||| | ||| |
|
|
| T |
22922325 |
cattgttcttcctttcaaggtcttgacgcttcttcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaagacctggagg |
22922226 |
T |
|
| Q |
312 |
ctttcttggttgttgttgtt---gttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| | ||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
22922225 |
ctttcttggttgttgttgttgttgttgcggattaggaaacaagggatttaaggtgttgttgttggagtaactcaagttagggtgcttattcat |
22922133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 11251976 - 11251877
Alignment:
| Q |
32 |
ccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttagtgttacc |
131 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| | ||||||| ||| | ||||||||||| |
|
|
| T |
11251976 |
ccttctttgtagcttttggaactaaagttgttaaaacctttttgctcctcaactcaatagcattataagtctcatttttaaagttgtctttagtgttacc |
11251877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 27171811 - 27171864
Alignment:
| Q |
33 |
cttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactc |
86 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
27171811 |
cttctttgtgacttttggaactaaaggtgttaaaaccttcttgcatctcaactc |
27171864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 401
Target Start/End: Original strand, 5895101 - 5895477
Alignment:
| Q |
25 |
tcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttag |
124 |
Q |
| |
|
|||||||| || || ||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||| | || |
|
|
| T |
5895101 |
tcatcaactttattgggaacctttggaactaaaggtgccaaaacctttttactcctcaactcaataacattgcaagtttcatttttagggttctcttgag |
5895200 |
T |
|
| Q |
125 |
tgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttct |
224 |
Q |
| |
|
| || |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||| || || |
|
|
| T |
5895201 |
tatttcccgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcattttccgtgaggcttcattgttcttcct |
5895300 |
T |
|
| Q |
225 |
ttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgt |
324 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || |||| ||| | |||||| ||||||||| |
|
|
| T |
5895301 |
ttcaaggtcttgactcttcttcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaatacctggaggcttccttggttgt |
5895400 |
T |
|
| Q |
325 |
tgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
5895401 |
tgttgttgttgtggattaggaaacaagggatttaaggtgttgttgttggagtaactcaagttagggtgcttattcat |
5895477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 27 - 401
Target Start/End: Complemental strand, 22019358 - 22018984
Alignment:
| Q |
27 |
atcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttagtg |
126 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||| ||||||| ||| ||||| |||| | ||| |
|
|
| T |
22019358 |
atcaactttcgtgggaacttttggaactaaaggtgtcagaaccttcttgctccttaactcaataacattgcaagtttcattcttaggattctcttgagta |
22019259 |
T |
|
| Q |
127 |
ttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttcttt |
226 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
22019258 |
ttacctgagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcattttacttgaggcttcattgttctttcttt |
22019159 |
T |
|
| Q |
227 |
caatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgttg |
326 |
Q |
| |
|
||| |||||||| || |||||||| |||||||||| ||||||||| |||||||| ||||||||||| || |||| || | || ||| ||||||||||| |
|
|
| T |
22019158 |
caaggtcttgactcttattcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaaaacatggagacttccttggttgttg |
22019059 |
T |
|
| Q |
327 |
ttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
||||||||||||||| |||| |||||| || ||||||||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
22019058 |
ttgttgttgaggattgggcagcaaagggtttaaggtgttgttgttggagtaactcaagtaagggtgtttgttcat |
22018984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 16321738 - 16322019
Alignment:
| Q |
12 |
ctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttattttta |
111 |
Q |
| |
|
||||||||| | |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
16321738 |
ctccacaacattttcatcaactttattgggaacttttggaactaaaggtgtcaaaacctttttactcctcaactcaataacattgcaagtttcattttta |
16321837 |
T |
|
| Q |
112 |
gggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggctt |
211 |
Q |
| |
|
||||||| | ||| || || |||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
16321838 |
gggttctcttgagtatttcctaagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcattttccttgaggctt |
16321937 |
T |
|
| Q |
212 |
cattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgt |
293 |
Q |
| |
|
||||||| || ||||||| |||||||| ||||||||||| |||||||||| ||||| ||| || ||||| ||||||||||| |
|
|
| T |
16321938 |
cattgttcttcctttcaaggtcttgactcttcttcatttcttcaaagttactttgagacatttttatgaaattcatcattgt |
16322019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 18503713 - 18503994
Alignment:
| Q |
12 |
ctccacaacgtcctcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttattttta |
111 |
Q |
| |
|
||||||||| | |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
18503713 |
ctccacaacattttcatcaactttattgggaacttttggaactaaaggtgtcaaaacctttttactcctcaactcaataacattgcaagtttcattttta |
18503812 |
T |
|
| Q |
112 |
gggttcttcttagtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggctt |
211 |
Q |
| |
|
|||||| | ||| || || |||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
18503813 |
aggttctcttgagtatttcctaagaatccccctttgttctgttcagccaactgcttagctaattgcccaagttgtgtttcaagcattttccttgaggctt |
18503912 |
T |
|
| Q |
212 |
cattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgt |
293 |
Q |
| |
|
||||||| || ||||||| |||||||| ||||||||||| |||||||||| ||||| ||| || ||||| ||||||||||| |
|
|
| T |
18503913 |
cattgttcttcctttcaaggtcttgactcttcttcatttcttcaaagttactttgagacatttttatgaaattcatcattgt |
18503994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 3288564 - 3288672
Alignment:
| Q |
32 |
ccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttagtgttacc |
131 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||| |||||||| | ||||||||||| |
|
|
| T |
3288564 |
ccttctttgtagcttttggaactaaaggtgttaaaaactttttgctcctcaactcaatagtattacaagtttcattgttagggttatctttagtgttacc |
3288663 |
T |
|
| Q |
132 |
cgagaatcc |
140 |
Q |
| |
|
| |||||| |
|
|
| T |
3288664 |
tgtgaatcc |
3288672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 20534677 - 20534768
Alignment:
| Q |
25 |
tcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggtt |
116 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||| | ||| |||||||| |
|
|
| T |
20534677 |
tcatcacccttctttgtagcttttggaactaaagatgttaaaatctttttgctcctcaactcaatagcattgcaagtctcattcttagggtt |
20534768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 16322016 - 16322093
Alignment:
| Q |
324 |
ttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
|||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
16322016 |
ttgttgttgttgcggattaggaaacaagggatttaaggtgttgttgttggagtaactcaagttagggtgcttattcat |
16322093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 18503991 - 18504068
Alignment:
| Q |
324 |
ttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
|||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
18503991 |
ttgttgttgttgcggattaggaaacaagggatttaaggtgttgttgttggagtaactcaagttagggtgcttattcat |
18504068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 11786824 - 11786735
Alignment:
| Q |
48 |
tggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttagtgttacccgagaa |
137 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||| || ||||||| |||||||| | |||||||||||| | |||||||||||| ||||| |
|
|
| T |
11786824 |
tggaacaaaaggtggtaaaaccttcttgctccttaagccaatagctttacaagtctcatttttagggttttccttagtgttacctgagaa |
11786735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 6773482 - 6773528
Alignment:
| Q |
46 |
tttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagc |
92 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
6773482 |
tttggaattaaaggtgtcaaaacctttttgcttctcaattcaatagc |
6773528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 11786663 - 11786541
Alignment:
| Q |
208 |
gcttcattgttatttctttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatc--attgtctcttcaagacc |
305 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||| ||| | |||||||| |||||||||||||||||||| || ||| || ||||||||||| | |
|
|
| T |
11786663 |
gcttcattgttctttctttcagcttcttgactcttcatcagtgattcaaagtttccttgagtcatcttcatgaaattgatcatatagtctcttcaagtgc |
11786564 |
T |
|
| Q |
306 |
agaaggctttcttggttgttgtt |
328 |
Q |
| |
|
|||||||| || || ||||||| |
|
|
| T |
11786563 |
tgaaggcttcctaggctgttgtt |
11786541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 27 - 401
Target Start/End: Original strand, 34141350 - 34141724
Alignment:
| Q |
27 |
atcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggttcttcttagtg |
126 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||| ||| ||||| |||| | ||| |
|
|
| T |
34141350 |
atcaactttcgtgggaacttttggaactaaaggtgtcagcaccttcttgctccttaactcaataacattgcaagtttcattcttaggattctcttgagta |
34141449 |
T |
|
| Q |
127 |
ttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttcttt |
226 |
Q |
| |
|
||||| |||||||| |||||||| | ||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
34141450 |
ttacctgagaatcctcctttgttttgttcagccaactgcttagctaattgcccaagttgtgtttcaagcatttttcttgaggcttcattgttctttcttt |
34141549 |
T |
|
| Q |
227 |
caatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgttg |
326 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||||| || |||| || | || ||| ||||||||||| |
|
|
| T |
34141550 |
caaggtcttgactcttcttcatttcttcaaagttactttgagtcattttcatgaaattcatcattgtttcctcaatacttggagacttccttggttgttg |
34141649 |
T |
|
| Q |
327 |
ttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
||||||||||||||| |||| |||||| || ||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
34141650 |
ttgttgttgaggattgggcagcaaagggtttaaggtgttgttgttggagtaactcaagttagggtgtttgttcat |
34141724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 124 - 440
Target Start/End: Complemental strand, 22141911 - 22141599
Alignment:
| Q |
124 |
gtgttacccgagaatccccctttgttctattcagccaactgcttagctaaatgctagggttgtgtttcaagcaatttccttgaggcttcattgttatttc |
223 |
Q |
| |
|
|||||||| ||||||||||||||||| | | |||||||||||||||| ||| |||| |||||||||| || ||||||||||||||||| |||| |
|
|
| T |
22141911 |
gtgttacctgagaatccccctttgttttgt----ccaactgcttagctaattgcccaagttgagtttcaagcatctttcttgaggcttcattgttctttc |
22141816 |
T |
|
| Q |
224 |
tttcaatatcttgacttttcttcatttcctcaaagttaccttgagtcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttg |
323 |
Q |
| |
|
|||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| ||||| |||||| | |||||||||||||| || |
|
|
| T |
22141815 |
tttcaacatcttgactctttttcatttcttcaaagttaccttgagtcatcttcatgaaattgatcatagtctcctcaagagccgaaggctttcttggctg |
22141716 |
T |
|
| Q |
324 |
ttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcatacctgaattatagtaagggttt |
423 |
Q |
| |
|
||||||||||| ||| ||||| | || ||| ||| ||| ||||||||| || ||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
22141715 |
ttgttgttgttaagggttaggtagcagagggttccaggggttgttgtttgaaaaactcaggttagggtgcttgttaaagcctgaattatagtaagggttg |
22141616 |
T |
|
| Q |
424 |
tgcctttgctacttcac |
440 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
22141615 |
ggcctttgatagttcac |
22141599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 22145415 - 22145340
Alignment:
| Q |
25 |
tcatcaaccttctttggaacttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaag |
100 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
22145415 |
tcatcaactttctttgaaacttttggaactaaaagtgtcaaaacctttttcctcctcaattcaatagcattgcaag |
22145340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 320 - 416
Target Start/End: Original strand, 15541034 - 15541130
Alignment:
| Q |
320 |
gttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgttgttggagtaactcagattagggtgcttgttcatacctgaattatagta |
416 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||| || || ||||| |||| |||||||||||||| | |||||||| ||||| |
|
|
| T |
15541034 |
gttgttgttgttgttgaggattaggaagcaaaggattcaaggtgttattatttgagtagctcaagttagggtgcttgttaaggcctgaattgtagta |
15541130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0661
Description:
Target: scaffold0661; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 8646 - 8514
Alignment:
| Q |
269 |
tcatcttcatgaagttcatcattgtctcttcaagaccagaaggctttcttggttgttgttgttgttgaggattaggcatcaaaggattcaaggtgttgtt |
368 |
Q |
| |
|
|||| |||||||| ||||||||||| || |||||||| | ||||||||||||||||||||||||||| |||||||| | ||| ||||| ||||||||||| |
|
|
| T |
8646 |
tcattttcatgaaattcatcattgtttcctcaagacctggaggctttcttggttgttgttgttgttgtggattaggaaacaagggatttaaggtgttgtt |
8547 |
T |
|
| Q |
369 |
gttggagtaactcagattagggtgcttgttcat |
401 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |
|
|
| T |
8546 |
gttggagtaactcaagttagggtgcttattcat |
8514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 24784765 - 24784693
Alignment:
| Q |
44 |
cttttggaactaaaggtgtcaaaacctttttgctcctcaactcaatagcattacaagttttatttttagggtt |
116 |
Q |
| |
|
||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
24784765 |
cttttcgaactaaaagtgtcaaaacattttttctcctcaactcaatagcattacaagtttcattcttagggtt |
24784693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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