View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16339_high_1_N (Length: 487)
Name: NF16339_high_1_N
Description: NF16339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16339_high_1_N |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 119 - 487
Target Start/End: Original strand, 9828060 - 9828428
Alignment:
| Q |
119 |
atactcatagtagatcggatttttaaattattttcgttttagggtaaaatgagagtgatggaagatcggttgcttaggaataaagaacacaatcgggtgc |
218 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9828060 |
atactcatagtaggtcggatttttaa-ttattttcgttttagggtaaaatgagagtgatggtagatcggttgcttaggaataaagaacacaatcgggtgt |
9828158 |
T |
|
| Q |
219 |
catcttctcaagaacaaggtgcatatgacttatttgttaatctattgatgttagaagacgagaaacgatgtgatattactaaaataccatcaggggatgg |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9828159 |
catcttctcaagaacacggtgcatatgacttatttgttaatctattgatgttagaagacgagaaacgatgtgatattactaaaatcccatcaggggatgg |
9828258 |
T |
|
| Q |
319 |
gtgcatggaggggaaactcgatccctaccagagatggggatggagatcaaaattcctaccc-accggagtacatgttcgggatttttgtggggaataatc |
417 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||| |||| |||||||||||||||||| ||| |||| || ||| || |
|
|
| T |
9828259 |
gtgcatggtggggaaactcgatccctataagagacggggatggatatcaaaattccaaccctgccggagtacatgttcgggttttctgtgcgggatactc |
9828358 |
T |
|
| Q |
418 |
ggtgtttgggggtgagagaggtaaaactagtctccacccccattggtatatatacatatcaccaacatgg |
487 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9828359 |
gggggttgggggtgagagaggtaaaactaatctccacccccattggtatatatacatatcaccaacatgg |
9828428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 9828428 - 9828322
Alignment:
| Q |
2 |
ccatgttggtgatatgtatatataccaatgggggtggagactagttttacctctctcacccccaaacaccgattattccccacaaaaatcccgaacatgt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||| || |||| ||| ||||||||||| |
|
|
| T |
9828428 |
ccatgttggtgatatgtatatataccaatgggggtggagattagttttacctctctcacccccaacccccgagtatcccgcacagaaaacccgaacatgt |
9828329 |
T |
|
| Q |
102 |
actccgg |
108 |
Q |
| |
|
||||||| |
|
|
| T |
9828328 |
actccgg |
9828322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University