View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1633_high_1 (Length: 805)
Name: NF1633_high_1
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 673
Target Start/End: Original strand, 40600534 - 40601200
Alignment:
| Q |
11 |
cacagagccaaacgcaagaaagatgagattgataacaaggatagtgtgcaaaaatatatttgtattttcacttttgtttctaacacatctaaatctttaa |
110 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||| |||||||| |||||| |||||| |
|
|
| T |
40600534 |
cacagagtcaaacgtgagaaagatgaggctgataacaaggatattgtgcaaaaatatatttgtgttctcacttttgtctctaacacgtctaaacctttaa |
40600633 |
T |
|
| Q |
111 |
tttaaatttgaagatgtataaaggtgatccaccgatgaaccgcttatttgatggttcatcatagaatccaccgtttattttagtttatataggtgagaaa |
210 |
Q |
| |
|
||||||||||| | ||||||||| || |||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40600634 |
tttaaatttgatggtgtataaagatggtccaccgatgaaccacttatttgatggttcatcctaaaatccaccgtttattttagcttatataggtgagaaa |
40600733 |
T |
|
| Q |
211 |
tttattagcacnnnnnnn-aataaaatgattatgcttgttaaaatatcatttttt-atttatatttgagtgtaagtttcgtttcaaaaaatattttgcta |
308 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40600734 |
tttattagcacttttttttaataaaatgattaagcttgttaaaatatcatttttttatttatatttgagtgtaagtttcgtttcaaaaaatattttgtta |
40600833 |
T |
|
| Q |
309 |
cggaattaattttatgctgaaaataaaaagctattttggttaggttttgaagaaaa-tcttttttatagaagagagaaaaatgaaaattctctttttata |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40600834 |
cggaattaattttatgctgaaaataaaaagctattttggttaggttttgaaaaaaaatcttttttatagaggagagaaaaatgaaaattctctttttata |
40600933 |
T |
|
| Q |
408 |
attttaagcaaacataacataatttgttctctggttatgtttttcttaaaatatctaaaa-acaaccttctttttaacaagtccactcatatacttgagt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
40600934 |
attttaagcaaacataacataatttgttctctggttatgtttttcttaaaatatctaaaaaacaaccttctttttaacaagtccacttatgtacttgagt |
40601033 |
T |
|
| Q |
507 |
tttcaatgatcattttcattttgtctatcaaaaagaaatattaaaatcatttttatgaaatatatcctaaaagatttctcttttatcaaaacaaattgga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40601034 |
tttcaatgatcattttcattttgtctatcaaaaagaaatattaaaatcatttttatgaaatatatcctaaaagatttctcttttatcaaaacaaattgga |
40601133 |
T |
|
| Q |
607 |
tggaatcagttcctgaccagatccagctcatttgtatcatggatattattcattaatgctagtcttt |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40601134 |
tggaatcagttcctgaccagatccagctcatttgtatcatggatattattcattaatgctagtcttt |
40601200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 702 - 788
Target Start/End: Original strand, 40601201 - 40601287
Alignment:
| Q |
702 |
aaccaaaaggcatatactgctaaattgagaaatttctccacctaaaaagagtgtgcatcaaatcaaaacattgcctcatgcgtattt |
788 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40601201 |
aaccaaaaggcatatactgctaaattgagaaatttctccacctaaaaagagtgtgcatcaaatcaaaacattgcctcatgcgtattt |
40601287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 38559113 - 38558946
Alignment:
| Q |
16 |
agccaaacgcaagaaagatgagattgataacaaggatagtgtgcaaaaatata-tttgtattttcacttttgtttctaacacatctaaatctttaattta |
114 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38559113 |
agccaaacgtgagaaagatgaggctgacaacaaggatagtgtgcaaaaatatactttgtgttctcacttttgtctctaacacatctaaacctttaattta |
38559014 |
T |
|
| Q |
115 |
aatttgaagatgtataaaggtgatccaccgatgaaccgcttatttgatggttcatcatagaatccacc |
182 |
Q |
| |
|
||| ||| | |||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
38559013 |
aatctgatggtgtataaaggtggtccaccgatgaaccacttatttaatggttcatcctagaatccacc |
38558946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 3e-44; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 53343244 - 53343105
Alignment:
| Q |
43 |
taacaaggatagtgtgcaaaaatatatttgtattttcacttttgtttctaacacatctaaatctttaatttaaatttgaagatgtataaaggtgatccac |
142 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||| |||||||||| |||| ||||||||||||| ||| | |||||||||||| ||||| |
|
|
| T |
53343244 |
taacaaggatagtgtgcaaaaatatacttgtgttctcacttttgtctctaacacatttaaacctttaatttaaatctgatggtgtataaaggtggtccac |
53343145 |
T |
|
| Q |
143 |
cgatgaaccgcttatttgatggttcatcatagaatccacc |
182 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
53343144 |
cgatgaaccacttatttgatggttcatcctagaatccacc |
53343105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 52717623 - 52717761
Alignment:
| Q |
44 |
aacaaggatagtgtgcaaaaatatatttgtattttcacttttgtttctaacacatctaaatctttaatttaaatttgaagatgtataaaggtgatccacc |
143 |
Q |
| |
|
||||||||||||||||| || |||| |||| || ||| |||| | ||||||||||||||| ||||||||||||| | | |||| ||| ||| |||| | |
|
|
| T |
52717623 |
aacaaggatagtgtgcagaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatcgaatggtgtacaaaagtggtccatc |
52717722 |
T |
|
| Q |
144 |
gatgaaccgcttatttgatggttcatcatagaatccacc |
182 |
Q |
| |
|
||||||| ||| ||||||||||| | ||||||||||| |
|
|
| T |
52717723 |
catgaaccatttagttgatggttcaccctagaatccacc |
52717761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 32558357 - 32558218
Alignment:
| Q |
44 |
aacaaggatagtgtgcaaaaatatatttgtattttcacttttgtt-tctaacacatctaaatctttaatttaaatttgaagatgtataaaggtgatccac |
142 |
Q |
| |
|
||||||||||||||||| || |||| || | || ||| |||| || ||||||| ||||||| ||||||||||||| | | |||| ||| ||||||| |
|
|
| T |
32558357 |
aacaaggatagtgtgcagaagtatacttatgttctcattttttttgtctaacatatctaaacctttaatttaaatcgaatggtgtacaaaagtgatccgt |
32558258 |
T |
|
| Q |
143 |
cgatgaaccgcttatttgatggttcatcatagaatccacc |
182 |
Q |
| |
|
|| |||||| |||| ||||||||||| | ||||||||||| |
|
|
| T |
32558257 |
cggtgaaccacttagttgatggttcaccctagaatccacc |
32558218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 7050533 - 7050463
Alignment:
| Q |
47 |
aaggatagtgtgcaaaaatatatttgtattttcacttttgtttctaacacatctaaatctttaatttaaat |
117 |
Q |
| |
|
|||||||||||||| || |||| |||| || ||| |||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
7050533 |
aaggatagtgtgcagaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaat |
7050463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 7050980 - 7051032
Alignment:
| Q |
135 |
tgatccaccgatgaaccgcttatttgatggttcatcatagaatccaccgttta |
187 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| | ||||||||||| |||| |
|
|
| T |
7050980 |
tgatccaccgatgaatcacttatttgatggttcaccctagaatccaccattta |
7051032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 21838242 - 21838295
Alignment:
| Q |
127 |
tataaaggtgatccaccgatgaaccgcttatttgatggttcatcatagaatcca |
180 |
Q |
| |
|
|||||| ||| |||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
21838242 |
tataaaagtggtccaccgatgaaccacttaattgatggttcatcctagaatcca |
21838295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 35386174 - 35386108
Alignment:
| Q |
318 |
ttttatgctgaaaataaaaagctattttggttaggttttgaagaaaatc-ttttttatagaagagag |
383 |
Q |
| |
|
||||||||||||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
35386174 |
ttttatgctgaaaatggaatactattttgattagattttgaagaaaatcatttttaatagaagagag |
35386108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 8641811 - 8641949
Alignment:
| Q |
44 |
aacaaggatagtgtgcaaaaatatatttgtattttcacttttgtttctaacacatctaaatctttaatttaaatttgaagatgtataaaggtgatccacc |
143 |
Q |
| |
|
|||||||||||||| | || |||| |||| || ||| |||| | ||||||||||||||| ||||||||||||| | | |||| ||| ||| |||| | |
|
|
| T |
8641811 |
aacaaggatagtgtcctgaagtatacttgtgttctcatttttttgtctaacacatctaaacctttaatttaaatcaaatggtgtacaaaagtggtccatc |
8641910 |
T |
|
| Q |
144 |
gatgaaccgcttatttgatggttcatcatagaatccacc |
182 |
Q |
| |
|
| |||| |||| ||||||||||| | ||||||||||| |
|
|
| T |
8641911 |
ggaaaaccacttagttgatggttcaccctagaatccacc |
8641949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University