View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_high_16 (Length: 389)
Name: NF1633_high_16
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 38752743 - 38753104
Alignment:
| Q |
18 |
acaaggagaaccagaaccagtcatcatggccgtaagaatttttggttgtttctggctctcttgtgctaatcataatcatttatcaccatctttatagacn |
117 |
Q |
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| T |
38752743 |
acaaggagaaccagaaccagtcatcatggccgtaagaatttttggttgtttctggctctcttgtgctaatcataatcatttatcaccatctttatagaca |
38752842 |
T |
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| Q |
118 |
nnnnnngaattaaacaagaggaaagggaagattattagaacgatgaatattttaattacataaggttcccttaatggcctacatgttaattattttattt |
217 |
Q |
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| T |
38752843 |
aaaaaagaattaaacaagaggaaagggaagattattagaacgatgaatattt-aatttcataaggttcccttaatggcctacatgttaattattttattt |
38752941 |
T |
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| Q |
218 |
catataaaactatatcaccaaatttttatttgttagaaaatgagattcttatttaaaaacatccttatgtgacaaaattaagagatagcattaaccaaac |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752942 |
catataaaactatatcaccaaaattttatttgttagaaaatgagattcttatttaaaaacatccttatgtgacaaaattaagagatagcattaaccaaac |
38753041 |
T |
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| Q |
318 |
ccattttgtttgatgattggatctagctattggctcttgtcttttctgtttctcaagaattat |
380 |
Q |
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| T |
38753042 |
ccattttgtttgatgattggatctagctattggctcttgtcttttctgtttctcaagaattat |
38753104 |
T |
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