View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1633_high_2 (Length: 699)

Name: NF1633_high_2
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1633_high_2
NF1633_high_2
[»] chr3 (10 HSPs)
chr3 (310-612)||(51057870-51058172)
chr3 (310-612)||(43020475-43020777)
chr3 (513-647)||(41331757-41331891)
chr3 (513-647)||(34022313-34022446)
chr3 (513-650)||(49615892-49616029)
chr3 (310-380)||(41331917-41331987)
chr3 (310-379)||(49615796-49615865)
chr3 (316-380)||(41993921-41993985)
chr3 (310-379)||(34022217-34022286)
chr3 (19-65)||(48409482-48409528)
[»] chr1 (21 HSPs)
chr1 (310-610)||(26246150-26246451)
chr1 (313-610)||(36834645-36834942)
chr1 (310-611)||(47778811-47779112)
chr1 (310-469)||(23860718-23860877)
chr1 (490-648)||(7860668-7860826)
chr1 (513-647)||(23860585-23860719)
chr1 (513-611)||(9614662-9614760)
chr1 (513-611)||(51562095-51562193)
chr1 (513-611)||(3800482-3800580)
chr1 (513-610)||(38929193-38929288)
chr1 (310-427)||(7860921-7861032)
chr1 (310-379)||(38929097-38929166)
chr1 (310-380)||(3800386-3800456)
chr1 (310-376)||(9614566-9614632)
chr1 (310-380)||(51561999-51562069)
chr1 (19-70)||(29225571-29225622)
chr1 (14-68)||(26924428-26924481)
chr1 (436-469)||(3800450-3800483)
chr1 (436-469)||(51562063-51562096)
chr1 (621-649)||(3800342-3800370)
chr1 (441-469)||(9614635-9614663)
[»] chr2 (6 HSPs)
chr2 (14-269)||(6972702-6972959)
chr2 (310-445)||(8740723-8740858)
chr2 (513-648)||(8740870-8741004)
chr2 (646-678)||(6972958-6972990)
chr2 (313-380)||(32742209-32742279)
chr2 (19-69)||(28843951-28844001)
[»] chr5 (18 HSPs)
chr5 (310-490)||(10831192-10831372)
chr5 (310-490)||(10833169-10833349)
chr5 (490-611)||(10831622-10831743)
chr5 (490-646)||(10832762-10832919)
chr5 (490-647)||(10830898-10831055)
chr5 (310-445)||(35467756-35467891)
chr5 (513-612)||(35467645-35467744)
chr5 (513-648)||(10862705-10862839)
chr5 (513-648)||(23847559-23847693)
chr5 (513-648)||(23616163-23616296)
chr5 (515-647)||(5712900-5713034)
chr5 (310-380)||(5713062-5713132)
chr5 (310-379)||(23616323-23616392)
chr5 (310-379)||(23847720-23847789)
chr5 (310-372)||(10862873-10862935)
chr5 (436-468)||(5713036-5713068)
chr5 (441-469)||(10862838-10862866)
chr5 (312-380)||(36836749-36836817)
[»] chr8 (13 HSPs)
chr8 (310-490)||(27592566-27592746)
chr8 (490-612)||(27594077-27594199)
chr8 (513-611)||(16847949-16848047)
chr8 (513-646)||(29411077-29411210)
chr8 (310-380)||(29410982-29411052)
chr8 (310-380)||(16847853-16847923)
chr8 (14-69)||(14748865-14748920)
chr8 (313-380)||(21356057-21356124)
chr8 (435-469)||(16847916-16847950)
chr8 (3-68)||(34403109-34403174)
chr8 (17-70)||(42412544-42412597)
chr8 (312-380)||(1236258-1236326)
chr8 (316-380)||(15552326-15552390)
[»] chr6 (8 HSPs)
chr6 (310-469)||(1251844-1252003)
chr6 (513-648)||(5384639-5384775)
chr6 (513-607)||(1251751-1251845)
chr6 (513-610)||(13853960-13854056)
chr6 (310-379)||(13853864-13853933)
chr6 (333-376)||(5384805-5384848)
chr6 (14-68)||(33921627-33921681)
chr6 (313-380)||(647899-647966)
[»] chr7 (15 HSPs)
chr7 (493-647)||(45487133-45487286)
chr7 (513-612)||(47879937-47880036)
chr7 (513-611)||(34593040-34593138)
chr7 (513-611)||(45110776-45110873)
chr7 (513-612)||(48384838-48384937)
chr7 (513-611)||(29712959-29713050)
chr7 (310-379)||(45110900-45110969)
chr7 (310-378)||(47880064-47880132)
chr7 (310-376)||(29712863-29712929)
chr7 (310-380)||(34592944-34593014)
chr7 (310-380)||(48384963-48385033)
chr7 (312-380)||(28164913-28164981)
chr7 (14-68)||(47238113-47238167)
chr7 (435-469)||(48384936-48384970)
chr7 (621-650)||(48385049-48385078)
[»] chr4 (18 HSPs)
chr4 (513-612)||(1717330-1717429)
chr4 (513-612)||(15666516-15666615)
chr4 (513-612)||(46109164-46109263)
chr4 (513-611)||(52772446-52772544)
chr4 (515-611)||(50390927-50391023)
chr4 (513-610)||(52605987-52606083)
chr4 (310-380)||(15666641-15666711)
chr4 (310-380)||(46109068-46109138)
chr4 (310-380)||(52772350-52772420)
chr4 (313-380)||(50390832-50390899)
chr4 (310-379)||(52606110-52606179)
chr4 (310-372)||(1717235-1717297)
chr4 (312-380)||(49228225-49228293)
chr4 (310-380)||(46632537-46632607)
chr4 (312-380)||(13938870-13938938)
chr4 (436-469)||(15666614-15666647)
chr4 (436-469)||(46109132-46109165)
chr4 (436-468)||(50390893-50390925)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 310 - 612
Target Start/End: Complemental strand, 51058172 - 51057870
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51058172 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 51058073  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccact 509  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  51058072 gctgcatgctcccatactgtttcacgttaccctatctccatgagttcaaaagtcactttcttttgatacacgtgcgcagtaattattacttaaacccact 51057973  T
Q  510 ccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51057972 ccatcattaattattactaaaacatgacaagggcaaaattggaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattggtg 51057873  T
Q  610 tgc 612  Q
    |||    
T  51057872 tgc 51057870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 310 - 612
Target Start/End: Complemental strand, 43020777 - 43020475
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43020777 ttgtggtctcaaatgtaagaaaaagtatagtaaaagtaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 43020678  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccact 509  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43020677 gctgcatgctcccatactgtttcacgttaccctatcttcatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccact 43020578  T
Q  510 ccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtg 609  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43020577 ccatcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattggtg 43020478  T
Q  610 tgc 612  Q
    |||    
T  43020477 tgc 43020475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 513 - 647
Target Start/End: Complemental strand, 41331891 - 41331757
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||     
T  41331891 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgatttcaatgtaatcaattcattttcttaattagtgtgt 41331792  T
Q  613 nnnnnnnctccctacatttgagaccggagggagta 647  Q
            |||||||||||||||||||||||||||    
T  41331791 tttttttttccctacatttgagaccggagggagta 41331757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 513 - 647
Target Start/End: Original strand, 34022313 - 34022446
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||     
T  34022313 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtac-ttttttaacatgacttcaatgtaatcaattcattttcttaagtggtgtgt 34022411  T
Q  613 nnnnnnnctccctacatttgagaccggagggagta 647  Q
            |||| ||||||||||||||||||||||    
T  34022412 tttttttttcccaacatttgagaccggagggagta 34022446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 513 - 650
Target Start/End: Original strand, 49615892 - 49616029
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg- 611  Q
    ||||||||||||||||||||||||||| | |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  49615892 tcattaattattactaaaacatgacaatgacaaaattgaaaagttgtac-ttttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgt 49615990  T
Q  612 cnnnnnnnctccctacatttgagaccggagggagtatgt 650  Q
            |||||||||||||||||||||||||||||||    
T  49615991 ttttttttctccctacatttgagaccggagggagtatgt 49616029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 41331987 - 41331917
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  41331987 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccct 41331917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 49615796 - 49615865
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    ||||||||||||||  |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  49615796 ttgtggtctcaaatgtaagaaaaaatatagtaaaagcaacctaataaatgctactattccaattttaccc 49615865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 41993921 - 41993985
Alignment:
Q  316 tctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||  |||||||||||| |||||| |||||||||||||||||||||| |||| |||||||    
T  41993921 tctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaatgttaccct 41993985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 34022217 - 34022286
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    |||| |||||||||  |||||||||||| ||||||  ||||||||||||| ||||||| |||||||||||    
T  34022217 ttgtagtctcaaatgtaagaaaaagtatagtaaaaataacctaataaatgttactattccaattttaccc 34022286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 48409528 - 48409482
Alignment:
Q  19 ggacaatattttttaacaaatggctcgattattacgggatggaggga 65  Q
    |||||||||||||| |||||||||||  ||||||||||| |||||||    
T  48409528 ggacaatatttttttacaaatggctcagttattacgggacggaggga 48409482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 310 - 610
Target Start/End: Original strand, 26246150 - 26246451
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||| ||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  26246150 ttgtgatctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataatttaaa 26246249  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccact 509  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26246250 gctgcatgctcccatactgtttcatgttaccctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccact 26246349  T
Q  510 ccatcattaattattactaaaacatgacaagggcaaaattggaaaa-ttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggt 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26246350 ccatcattaattattactaaaacatgacaagggcaaaattggaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggt 26246449  T
Q  609 gt 610  Q
    ||    
T  26246450 gt 26246451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 313 - 610
Target Start/End: Original strand, 36834645 - 36834942
Alignment:
Q  313 tggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaagct 412  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36834645 tggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaagct 36834744  T
Q  413 gcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccactcca 512  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36834745 gcatgctcccatactgtttcacgttaccctatcttcatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccactcca 36834844  T
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgt 610  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36834845 tcattaattattactaaaacatgacaagggtaaaattggaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattggtgt 36834942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 310 - 611
Target Start/End: Complemental strand, 47779112 - 47778811
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47779112 ttgtggtctcaaatgtaagaaaaagtatagtaaaaataacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 47779013  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagtaattattacttaaacccact 509  Q
    | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47779012 gttgcatgctcccatactctttcacgttaccctatctccatgagttcaaaagtcactttcttttcatacacgtgcacaataattattacttaaacccact 47778913  T
Q  510 ccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtg 609  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47778912 ccatcattaattattactaaaacatgacaaaggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaattggtg 47778813  T
Q  610 tg 611  Q
    ||    
T  47778812 tg 47778811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 310 - 469
Target Start/End: Complemental strand, 23860877 - 23860718
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23860877 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 23860778  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttc 469  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  23860777 gctgcatgctcccataatgtttcacgttaccctatctccatgagttcaaaagtcactttc 23860718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 490 - 648
Target Start/End: Complemental strand, 7860826 - 7860668
Alignment:
Q  490 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatca 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  7860826 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatca 7860727  T
Q  590 attcattttcttaattggtgtgcnnnnnnnctccctacatttgagaccggagggagtat 648  Q
    ||||||||| ||||||||||||         ||||||||||||||||||||||||||||    
T  7860726 attcatttttttaattggtgtgttttttttttccctacatttgagaccggagggagtat 7860668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 513 - 647
Target Start/End: Complemental strand, 23860719 - 23860585
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23860719 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgtcttcaatgtaatcaattcattttcttaattggtgtgc 23860620  T
Q  613 nnnnnnnctccctacatttgagaccggagggagta 647  Q
            |||||||||||||||||||||||||||    
T  23860619 tttttttttccctacatttgagaccggagggagta 23860585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 513 - 611
Target Start/End: Original strand, 9614662 - 9614760
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9614662 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaattggtgtg 9614760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 513 - 611
Target Start/End: Original strand, 51562095 - 51562193
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51562095 tcattaattattattaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 51562193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 513 - 611
Target Start/End: Original strand, 3800482 - 3800580
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  3800482 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaatatgatttcaatgtaatcaatttattttcttaattggtgtg 3800580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 513 - 610
Target Start/End: Original strand, 38929193 - 38929288
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgt 610  Q
    ||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38929193 tcattaattattactaaaacatgacaagg-caaaattgaaaagttgtac-ttttttaacatgacttcaatgtaatcaattcattttcttaattggtgt 38929288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 7861032 - 7860921
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||      ||| |||||||    
T  7861032 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatactattattccaattttacccttgttaaaaatca------catgattcaaa 7860939  T
Q  410 gctgcatgcttccatact 427  Q
    |||||||||| |||||||    
T  7860938 gctgcatgctcccatact 7860921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 38929097 - 38929166
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  38929097 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccc 38929166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 3800386 - 3800456
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  3800386 ttgtggtctcaaatgtaagaaaaaatatagtaaaagcaacctaataaatgctactattccaattttaccct 3800456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 9614566 - 9614632
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaatttta 376  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9614566 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatttta 9614632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 51561999 - 51562069
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  51561999 ttgtggtctcaaatgtaagaaaaagtatagtataagcaacctaataaatgctactattccaattttaccct 51562069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 29225571 - 29225622
Alignment:
Q  19 ggacaatattttttaacaaatggctcgattattacgggatggagggagtaag 70  Q
    |||||||||||||| |||||||||||  |||||| |||| ||||||||||||    
T  29225571 ggacaatatttttttacaaatggctcagttattatgggacggagggagtaag 29225622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 26924428 - 26924481
Alignment:
Q  14 ttctgggacaatattttttaacaaatggctcgattattacgggatggagggagta 68  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||| ||||||||||    
T  26924428 ttctgggacaatatttttt-acaaatgactcaattattatgggacggagggagta 26924481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 3800450 - 3800483
Alignment:
Q  436 ttactctatctccatgagttcaaaagtcactttc 469  Q
    |||| |||||||||||||||||||||||||||||    
T  3800450 ttaccctatctccatgagttcaaaagtcactttc 3800483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 51562063 - 51562096
Alignment:
Q  436 ttactctatctccatgagttcaaaagtcactttc 469  Q
    |||| |||||||||||||||||||||||||||||    
T  51562063 ttaccctatctccatgagttcaaaagtcactttc 51562096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 649
Target Start/End: Complemental strand, 3800370 - 3800342
Alignment:
Q  621 tccctacatttgagaccggagggagtatg 649  Q
    |||||||||||||||||||||||||||||    
T  3800370 tccctacatttgagaccggagggagtatg 3800342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 9614635 - 9614663
Alignment:
Q  441 ctatctccatgagttcaaaagtcactttc 469  Q
    |||||||||||||||||||||||||||||    
T  9614635 ctatctccatgagttcaaaagtcactttc 9614663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 6972702 - 6972959
Alignment:
Q  14 ttctgggacaatattttttaacaaatggctcgattattacgggatggagggagtaagtaaaaataaataccattttacttttgacccaaaaaattccata 113  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  6972702 ttctgggacaatattttttagcaaatggctcggttattacgggacggagggagtaagtaaaaaaaaataccatcttacttttgacccaaaaaattccata 6972801  T
Q  114 tttt--gagtgacacaaaattagtcgtccacattcataccattttccaaaatcaagacaaaaatgcaaaataaaatagaaagtgatgtttccaaccttca 211  Q
    ||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6972802 ttttttgagtgacacaaaattagtcgtccaaattcataccattttccaaaatcaagacaaaaatgcaaaataaaatagaaagtgatgtttccaaccttca 6972901  T
Q  212 tacatgtggtgaaatatttttgggaaaggcaaggcacgaattcaatatatataaatta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6972902 tacatgtggtgaaatatttttgggaaaggcaaggcacgaattcaatatatataaatta 6972959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 310 - 445
Target Start/End: Original strand, 8740723 - 8740858
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8740723 ttgtggtctcaaatataagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 8740822  T
Q  410 gctgcatgcttccatactgtttcacgttactctatc 445  Q
    |||||||||| ||||| ||||||||||||| |||||    
T  8740823 gctgcatgctcccataatgtttcacgttaccctatc 8740858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 513 - 648
Target Start/End: Original strand, 8740870 - 8741004
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8740870 tcattaattattactaaaatatgacaagggcaaaattggaaagttgtacatttt-taacatgacttcaatgtaatcaattcattttcttaattggtgtgc 8740968  T
Q  613 nnnnnnnctccctacatttgagaccggagggagtat 648  Q
            | ||||||||||||| ||||||||||||    
T  8740969 ttttttttttcctacatttgagaacggagggagtat 8741004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 646 - 678
Target Start/End: Original strand, 6972958 - 6972990
Alignment:
Q  646 tatgtcttaaaaattgtattatgagaaaggtta 678  Q
    |||||||||||||||||||||||||||||||||    
T  6972958 tatgtcttaaaaattgtattatgagaaaggtta 6972990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 32742279 - 32742209
Alignment:
Q  313 tggtctcaaatac---aagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    |||||||||||||   |||||||||||| ||||||  |||||| ||||||| |||||||||| ||||||||    
T  32742279 tggtctcaaatactaaaagaaaaagtatagtaaaatgaacctattaaatgccactatttcaagtttaccct 32742209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 28844001 - 28843951
Alignment:
Q  19 ggacaatattttttaacaaatggctcgattattacgggatggagggagtaa 69  Q
    |||||||||||||| ||||||| ||| |||||||||||| ||||| |||||    
T  28844001 ggacaatatttttttacaaatgactcaattattacgggagggaggaagtaa 28843951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 310 - 490
Target Start/End: Original strand, 10831192 - 10831372
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10831192 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 10831291  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagta 490  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10831292 gctgcatgctcccttactgtttcacgttaccctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagta 10831372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 310 - 490
Target Start/End: Complemental strand, 10833349 - 10833169
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10833349 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 10833250  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagta 490  Q
    ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10833249 gctacatgctcccatactgtttcacgttaccctatctccatgagttcaaaagtcactttcttttcatacacgtgcagagta 10833169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 490 - 611
Target Start/End: Original strand, 10831622 - 10831743
Alignment:
Q  490 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatca 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10831622 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatca 10831721  T
Q  590 attcattttcttaattggtgtg 611  Q
    ||||||||||||||||||||||    
T  10831722 attcattttcttaattggtgtg 10831743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 10832919 - 10832762
Alignment:
Q  490 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatca 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  10832919 aattattacttaaacccactccatcattaattattactaaaacatgacaaggacaaaattggaaagttgtacattttttaacatgacttcaatgtaatca 10832820  T
Q  590 attcattttcttaattggtgtgc-nnnnnnnctccctacatttgagaccggagggagt 646  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  10832819 attcattttcttaattggtgtgcttttttttttccctacatttgagaccggagggagt 10832762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 490 - 647
Target Start/End: Complemental strand, 10831055 - 10830898
Alignment:
Q  490 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatca 589  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  10831055 aattattacttaaacccattccatcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacataacttcaatgtaatca 10830956  T
Q  590 attcattttcttaattggtgtgcnnnnnnnctccctacatttgagaccggagggagta 647  Q
    ||||||||||||||||||||||         ||||||||||||||||| |||||||||    
T  10830955 attcattttcttaattggtgtgttttttttttccctacatttgagaccagagggagta 10830898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 310 - 445
Target Start/End: Complemental strand, 35467891 - 35467756
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35467891 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctattaaatgctactattccaattttacccttgttaaaaatcacattctcataattcaaa 35467792  T
Q  410 gctgcatgcttccatactgtttcacgttactctatc 445  Q
    |||||||||| | ||| ||||||||||||| |||||    
T  35467791 gctgcatgctcctataatgtttcacgttaccctatc 35467756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 513 - 612
Target Start/End: Complemental strand, 35467744 - 35467645
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35467744 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 35467645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 513 - 648
Target Start/End: Complemental strand, 10862839 - 10862705
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||     
T  10862839 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttatcatgatttcaatgtaatcaattcattttcttaattggtgtg- 10862741  T
Q  613 nnnnnnnctccctacatttgagaccggagggagtat 648  Q
            ||||||||||||||||||||||||||||    
T  10862740 tttttttttccctacatttgagaccggagggagtat 10862705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 513 - 648
Target Start/End: Complemental strand, 23847693 - 23847559
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  23847693 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtac-ttttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgt 23847595  T
Q  613 nnnnnnnctccctacatttgagaccggagggagtat 648  Q
            ||||||||||||||||||||||||||||    
T  23847594 tttttttttccctacatttgagaccggagggagtat 23847559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 513 - 648
Target Start/End: Complemental strand, 23616296 - 23616163
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  23616296 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtac-ttttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg- 23616199  T
Q  613 nnnnnnnctccctacatttgagaccggagggagtat 648  Q
            ||||||||||||||||||||||||||||    
T  23616198 tttttttttccctacatttgagaccggagggagtat 23616163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 515 - 647
Target Start/End: Complemental strand, 5713034 - 5712900
Alignment:
Q  515 attaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgcnn 614  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||      
T  5713034 attaattattactaaaacatgacaagggcaaaattagaaagttgtacattttttaacatgatttcaatgtaatcaattcatttttttaattgatgtgctt 5712935  T
Q  615 nnnnnct--ccctacatttgagaccggagggagta 647  Q
          |  ||||||||||||||||||||||||||    
T  5712934 ttttttttcccctacatttgagaccggagggagta 5712900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 5713132 - 5713062
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  5713132 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccct 5713062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 23616392 - 23616323
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    ||||||||||||||  |||||||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  23616392 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaattttaccc 23616323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 23847789 - 23847720
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    ||||||||||||||  |||||||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  23847789 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaattttaccc 23847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 10862935 - 10862873
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaat 372  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  10862935 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaat 10862873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 5713068 - 5713036
Alignment:
Q  436 ttactctatctccatgagttcaaaagtcacttt 468  Q
    |||| ||||||||||||||||||||||||||||    
T  5713068 ttaccctatctccatgagttcaaaagtcacttt 5713036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 10862866 - 10862838
Alignment:
Q  441 ctatctccatgagttcaaaagtcactttc 469  Q
    |||||||||||||||||||||||||||||    
T  10862866 ctatctccatgagttcaaaagtcactttc 10862838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 36836749 - 36836817
Alignment:
Q  312 gtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||| ||||||| |||| ||||||  |||||| ||||||| || ||| ||| ||||||||    
T  36836749 gtggtctcaaatataagaaaatgtatagtaaaatgaacctattaaatgccacaattccaagtttaccct 36836817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 9e-69; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 310 - 490
Target Start/End: Original strand, 27592566 - 27592746
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||   ||||||||||| ||||||| || ||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  27592566 ttgtggtctcaaatgttagaaaaagtatagtaaaagtaaactaataaatgccactattccaattttacccttgttaaaaataacattctcataattcaaa 27592665  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagta 490  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27592666 gctgcatgctcccatgctgtttcacgttaccctatctccatgagttcaaaagtcactttcttttcatacacgtgcacagta 27592746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 490 - 612
Target Start/End: Original strand, 27594077 - 27594199
Alignment:
Q  490 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatca 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27594077 aattattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatca 27594176  T
Q  590 attcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||    
T  27594177 attcattttcttaattggtgtgc 27594199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 513 - 611
Target Start/End: Original strand, 16847949 - 16848047
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16847949 tcattaattattactaaaacatgacaagggcaaaattggaaagttgaacattttttatcatgacttcaatgtaatcaattcattttcttaattggtgtg 16848047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 513 - 646
Target Start/End: Original strand, 29411077 - 29411210
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  29411077 tcattaattattactaaaacataacaagggcaaaattgaaaagttgtacattttttaacatgatttcaatgtaattaattcattttcttaattgatgtgc 29411176  T
Q  613 nnnnnnnctccctacatttgagaccggagggagt 646  Q
            ||||||||||| ||| ||||||||||    
T  29411177 tttttttttccctacatttaagatcggagggagt 29411210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 29410982 - 29411052
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  29410982 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccct 29411052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 16847853 - 16847923
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| |||||| |||||||||||||||||||||| |||| |||||||    
T  16847853 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaatgttaccct 16847923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 14748865 - 14748920
Alignment:
Q  14 ttctgggacaatattttttaacaaatggctcgattattacgggatggagggagtaa 69  Q
    |||||| ||||||||||||  ||||||||||| ||||||||| | |||||||||||    
T  14748865 ttctggaacaatatttttttgcaaatggctcggttattacggaacggagggagtaa 14748920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 21356057 - 21356124
Alignment:
Q  313 tggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    |||||||||||| |||||||||||| ||||||  || ||| ||||||| || ||||||| ||||||||    
T  21356057 tggtctcaaatataagaaaaagtatagtaaaataaatctattaaatgccacaatttcaaatttaccct 21356124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Original strand, 16847916 - 16847950
Alignment:
Q  435 gttactctatctccatgagttcaaaagtcactttc 469  Q
    ||||| |||||||||||||||||||||||||||||    
T  16847916 gttaccctatctccatgagttcaaaagtcactttc 16847950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 34403174 - 34403109
Alignment:
Q  3 tgggtagattattctgggacaatattttttaacaaatggctcgattattacgggatggagggagta 68  Q
    |||||| |||||| | |||||||||||||| ||||| |||||  ||||||||||| | ||||||||    
T  34403174 tgggtaaattattttaggacaatattttttcacaaaaggctcacttattacgggacgaagggagta 34403109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 42412544 - 42412597
Alignment:
Q  17 tgggacaatattttttaacaaatggctcgattattacgggatggagggagtaag 70  Q
    |||||||||||||||| ||||| |||||| |||||| ||||  |||||||||||    
T  42412544 tgggacaatatttttttacaaaaggctcgcttattatgggacagagggagtaag 42412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 1236326 - 1236258
Alignment:
Q  312 gtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||| |||||||||||| ||||||  |||||| ||||||  || ||| ||| ||||||||    
T  1236326 gtggtctcaaatataagaaaaagtatagtaaaatgaacctattaaatgtcacaattccaaatttaccct 1236258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 15552326 - 15552390
Alignment:
Q  316 tctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||| |||||||||||| ||||||  |||||| ||||||| || ||| ||| ||||||||    
T  15552326 tctcaaatataagaaaaagtatagtaaaatgaacctattaaatgcaacaattccaagtttaccct 15552390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 310 - 469
Target Start/End: Complemental strand, 1252003 - 1251844
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacccttgttaaaaatcacattctcataattcaaa 409  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  1252003 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacccttgttaaaaatcatattctcataattcaaa 1251904  T
Q  410 gctgcatgcttccatactgtttcacgttactctatctccatgagttcaaaagtcactttc 469  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1251903 gctgcatgctcccatactgtttcacgttaccctatctccatgagttcaaaagtcactttc 1251844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 513 - 648
Target Start/End: Complemental strand, 5384775 - 5384639
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5384775 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 5384676  T
Q  613 -nnnnnnnctccctacatttgagaccggagggagtat 648  Q
             ||||||||||||||||||||||||||||    
T  5384675 ttttttttttccctacatttgagaccggagggagtat 5384639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 513 - 607
Target Start/End: Complemental strand, 1251845 - 1251751
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattgg 607  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1251845 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattgg 1251751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 513 - 610
Target Start/End: Original strand, 13853960 - 13854056
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgt 610  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||    
T  13853960 tcattaattattactaaagcatgacaagggcaaaattgaaaagttgtac-ttttttaacatgacttcgatgtaatcatttcatttttttaattggtgt 13854056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 13853864 - 13853933
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  13853864 ttgtggtctcagatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccc 13853933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 5384848 - 5384805
Alignment:
Q  333 agtatggtaaaagcaacctaataaatgctactatttcaatttta 376  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  5384848 agtatagtaaaagcaacctaataaatgctactattccaatttta 5384805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 33921627 - 33921681
Alignment:
Q  14 ttctgggacaatattttttaacaaatggctcgattattacgggatggagggagta 68  Q
    ||||||||||||||||||| | |||||||||  ||||||||||| ||||||||||    
T  33921627 ttctgggacaatatttttttaaaaatggctcagttattacgggacggagggagta 33921681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 647966 - 647899
Alignment:
Q  313 tggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    |||||||||||| |||||||||||| ||||||  |||||| ||||||| |||||| ||  ||||||||    
T  647966 tggtctcaaatataagaaaaagtatagtaaaatgaacctattaaatgccactattccatgtttaccct 647899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 5e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 493 - 647
Target Start/End: Complemental strand, 45487286 - 45487133
Alignment:
Q  493 tattacttaaacccactccatcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaatt 592  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||    
T  45487286 tattacttaaacccactccatcattaattattactaaaacatgagaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatc-att 45487188  T
Q  593 cattttcttaattggtgtgcnnnnnnnctccctacatttgagaccggagggagta 647  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||    
T  45487187 cattttcttaattggtgtgttttttttctccctacatttgagaccggagggagta 45487133  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 513 - 612
Target Start/End: Complemental strand, 47880036 - 47879937
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47880036 tcattaattattactaaaacatgacaagggcaagattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 47879937  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 513 - 611
Target Start/End: Original strand, 34593040 - 34593138
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593040 tcattaattattactaaatcatgacaagggcaaaattggaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 34593138  T

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Target: chr7; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 513 - 611
Target Start/End: Complemental strand, 45110873 - 45110776
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45110873 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtac-ttttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 45110776  T

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Target: chr7; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 513 - 612
Target Start/End: Complemental strand, 48384937 - 48384838
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  48384937 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttatcatgacttcaatgtaaccaattcatttttttaattggtgtgc 48384838  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 513 - 611
Target Start/End: Original strand, 29712959 - 29713050
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||      ||||||||| |||||||||||||||||||||    
T  29712959 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtac-ttttttaacatg------atgtaatcatttcattttcttaattggtgtg 29713050  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 45110969 - 45110900
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  45110969 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccc 45110900  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 47880132 - 47880064
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttacc 378  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  47880132 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttacc 47880064  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 29712863 - 29712929
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaatttta 376  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  29712863 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatttta 29712929  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 34592944 - 34593014
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  34592944 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatgttaccct 34593014  T

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Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 48385033 - 48384963
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  48385033 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatgttaccct 48384963  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 28164981 - 28164913
Alignment:
Q  312 gtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||| |||||||||||| ||||||  |||||| ||||||| || ||| || |||||||||    
T  28164981 gtggtctcaaatataagaaaaagtatagtaaaatgaacctattaaatgccacaattccagttttaccct 28164913  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 47238167 - 47238113
Alignment:
Q  14 ttctgggacaatattttttaacaaatggctcgattattacgggatggagggagta 68  Q
    |||||||||||||||||||  |||||||||| ||||||| |||| ||||| ||||    
T  47238167 ttctgggacaatatttttttgcaaatggctcaattattatgggacggaggtagta 47238113  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 469
Target Start/End: Complemental strand, 48384970 - 48384936
Alignment:
Q  435 gttactctatctccatgagttcaaaagtcactttc 469  Q
    ||||| |||||||||||||||||||||||||||||    
T  48384970 gttaccctatctccatgagttcaaaagtcactttc 48384936  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 621 - 650
Target Start/End: Original strand, 48385049 - 48385078
Alignment:
Q  621 tccctacatttgagaccggagggagtatgt 650  Q
    ||||||||||||||||||||||||||||||    
T  48385049 tccctacatttgagaccggagggagtatgt 48385078  T

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Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 513 - 612
Target Start/End: Original strand, 1717330 - 1717429
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717330 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 1717429  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 513 - 612
Target Start/End: Complemental strand, 15666615 - 15666516
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15666615 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattgatgtgc 15666516  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 513 - 612
Target Start/End: Original strand, 46109164 - 46109263
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtgc 612  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46109164 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaattggtgtgc 46109263  T

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Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 513 - 611
Target Start/End: Original strand, 52772446 - 52772544
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52772446 tcattaattattactaaaacatgacaaggacaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 52772544  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 515 - 611
Target Start/End: Original strand, 50390927 - 50391023
Alignment:
Q  515 attaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgtg 611  Q
    |||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  50390927 attaattattactaaaacataacaagggcaaaattggaaagttatacattttttaacatgatttcaatgtaatcaattcattttcttaattgatgtg 50391023  T

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Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 513 - 610
Target Start/End: Complemental strand, 52606083 - 52605987
Alignment:
Q  513 tcattaattattactaaaacatgacaagggcaaaattggaaaattgtacattttttaacatgacttcaatgtaatcaattcattttcttaattggtgt 610  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  52606083 tcattaattattactaaaacatgacaagggcaaaattaaaaaattgtac-ttttttaacatgacttcaatgtaatcaatttatttttttaattggtgt 52605987  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 15666711 - 15666641
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15666711 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactatttcaattttaccct 15666641  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 46109068 - 46109138
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  46109068 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccct 46109138  T

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Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 52772350 - 52772420
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  52772350 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccct 52772420  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 50390832 - 50390899
Alignment:
Q  313 tggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  50390832 tggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccct 50390899  T

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Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 52606179 - 52606110
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccc 379  Q
    ||||||||||||||  |||||||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  52606179 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaattttaccc 52606110  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 1717235 - 1717297
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaat 372  Q
    ||||||||||||||  |||||||||||| |||||| |||||||||||||||||||||| ||||    
T  1717235 ttgtggtctcaaatgtaagaaaaagtatagtaaaatcaacctaataaatgctactattccaat 1717297  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 49228225 - 49228293
Alignment:
Q  312 gtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||| |||||||||||| ||||||  |||||| ||||||| || ||| ||||||||||||    
T  49228225 gtggtctcaaatataagaaaaagtatagtaaaatgaacctattaaatgccacaattccaattttaccct 49228293  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 46632537 - 46632607
Alignment:
Q  310 ttgtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||| ||||||  || ||||| ||| |||||| |||||||||||||||||||||| |||| |||||||    
T  46632537 ttgtggtttcaaatgtaaaaaaaaatatagtaaaaacaacctaataaatgctactattccaatgttaccct 46632607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 13938938 - 13938870
Alignment:
Q  312 gtggtctcaaatacaagaaaaagtatggtaaaagcaacctaataaatgctactatttcaattttaccct 380  Q
    ||||||||||||| |||||||||||| ||||||  |||||| ||||||| |||||  ||| ||||||||    
T  13938938 gtggtctcaaatataagaaaaagtatagtaaaatgaacctattaaatgccactatcccaagtttaccct 13938870  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 15666647 - 15666614
Alignment:
Q  436 ttactctatctccatgagttcaaaagtcactttc 469  Q
    |||| |||||||||||||||||||||||||||||    
T  15666647 ttaccctatctccatgagttcaaaagtcactttc 15666614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 46109132 - 46109165
Alignment:
Q  436 ttactctatctccatgagttcaaaagtcactttc 469  Q
    |||| |||||||||||||||||||||||||||||    
T  46109132 ttaccctatctccatgagttcaaaagtcactttc 46109165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 50390893 - 50390925
Alignment:
Q  436 ttactctatctccatgagttcaaaagtcacttt 468  Q
    |||| ||||||||||||||||||||||||||||    
T  50390893 ttaccctatctccatgagttcaaaagtcacttt 50390925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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