View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1633_high_28 (Length: 261)
Name: NF1633_high_28
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 3656822 - 3656711
Alignment:
| Q |
14 |
atcaaaacctctaattacatacatatttaaggagtcaaaatttcttactacttaaaccaatctattgttggttaaaatttgccatttatcacgtgaagat |
113 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3656822 |
atcaaaacctctaactacatacatacttaaggagccaaaatttcttactacttaaaccaatctattgttggttaaaatttgccatttatcacgtgaagat |
3656723 |
T |
|
| Q |
114 |
gagagatatttc |
125 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3656722 |
gagagatatttc |
3656711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 3656712 - 3656623
Alignment:
| Q |
156 |
tcttttagtttgatgtatagaaaacttaaatgacagagatattctttaaaatttcaaaattactttaacatgtctattatatatatgtat |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3656712 |
tcttttagtttgatgtatagaaaacttaaatgacagagatattctttaaaatttcaaaattactttaacatgtctattatatatatgtat |
3656623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University