View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_high_29 (Length: 257)
Name: NF1633_high_29
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 32119143 - 32119395
Alignment:
| Q |
1 |
aaagacaaatctgatcaaagacaacatatctaaatggagaca--accactccatagcagcagcaatgttgaactttggcaaagaatatccattaatcagg |
98 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32119143 |
aaagacaaatctgatcaaagacaacatatctatacggagacataaccattccatagcagcagcaatgttgaactttggcaaagaatatccattaatcagg |
32119242 |
T |
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| Q |
99 |
ttcatatatgttttctgtatccattgcactttcactttggtaagtagaaagttgcaagacatcaaagaggaagaaagcggtaaaaaagacaagcgacaaa |
198 |
Q |
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| T |
32119243 |
ttcatatatgttttctgtatccattgcact------ttggtaagtagaaccttgcaagacaacaaagaggaagaaagcggtaaaaaagacaagcgacaaa |
32119336 |
T |
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| Q |
199 |
ttattccaaagttataattattgaaaataactgacaagaaacggaaagaacggaactat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32119337 |
ttattccaaagttataattattgaaaataactgacaagaaacggaaagaacggaactat |
32119395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 14375647 - 14375535
Alignment:
| Q |
1 |
aaagacaaatctgatcaaagacaacatatctaaatggagaca--accactccatagcagcagcaatgttgaactttggcaaagaatatccattaatcagg |
98 |
Q |
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|||| ||||| ||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
14375647 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaactttggccgagaatacccatcaatcagt |
14375548 |
T |
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| Q |
99 |
ttcatatatgttt |
111 |
Q |
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||||||| ||||| |
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| T |
14375547 |
ttcatatttgttt |
14375535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 14375120 - 14375032
Alignment:
| Q |
133 |
ctttggtaagtagaaagttgcaagacatcaaagaggaagaaagcggt---aaaaaagacaagcgacaaattattccaaagttataatta |
218 |
Q |
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||||||| ||||||| ||||||||| ||||||||||||||||| | |||||| |||||| ||||| ||||||||||||||||||| |
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| T |
14375120 |
ctttggtcagtagaagcctgcaagacaacaaagaggaagaaagcgataaaaaaaaaaacaagcaacaaagtattccaaagttataatta |
14375032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 14238534 - 14238603
Alignment:
| Q |
42 |
aaccactccatagcagcagcaatgttgaactttggcaaagaatatccattaatcaggttcatatatgttt |
111 |
Q |
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| T |
14238534 |
aaccattccatagcagcagaaatgttgaaatttggccgagaatacccatcagtcagtttcatatttgttt |
14238603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 41449618 - 41449679
Alignment:
| Q |
42 |
aaccactccatagcagcagcaatgttgaactttggcaaagaatatccattaatcaggttcat |
103 |
Q |
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| T |
41449618 |
aaccattccatagcagcagcaatattgaactttggccgagaatacccatcagtcagtttcat |
41449679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 10593436 - 10593367
Alignment:
| Q |
42 |
aaccactccatagcagcagcaatgttgaactttggcaaagaatatccattaatcaggttcatatatgttt |
111 |
Q |
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||||| ||| |||||||||||||||| ||||||||| |||||| ||||||||||| ||||||| ||||| |
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| T |
10593436 |
aaccattccgtagcagcagcaatgttcaactttggccgagaatacccattaatcagtttcatatttgttt |
10593367 |
T |
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