View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_high_3 (Length: 611)
Name: NF1633_high_3
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 96 - 593
Target Start/End: Complemental strand, 28536526 - 28536032
Alignment:
| Q |
96 |
tgcagactattgttgattattcagtttgtttttataccttagcacttatgttgttagttgtctatctcaagctataattataatttctgtgagctgatag |
195 |
Q |
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| T |
28536526 |
tgcagactattgttgatt--tcagtttgtttttataccttagcacttatgttgttagttgtctatctcaagctataattataatttctttgagctgatag |
28536429 |
T |
|
| Q |
196 |
tttgtttgaaattatgaaacatttgagatgaaatacagttgtgattgttgtcgaaatttttattgatgtaaaatacttgatttcgaatacttaaaatgaa |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28536428 |
tttgtttgaaattatgaaacatttgagatgaaatacagttgtgattgttgttgaaatttttattgatgtaaaatacttgatttcgaatacttaaagtgaa |
28536329 |
T |
|
| Q |
296 |
atttttattgatgtaagagattgaatgtaagttgctcgatgtaacgaaaagacaacacaacctataagttgagggttgatagtaattaaagatgattttc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28536328 |
atttttattgatgtaagagattgaatgtaagttgctcgatgtaacgaaaagacaacgcaacctataagttgagggttgatagtaattaaagacgattttc |
28536229 |
T |
|
| Q |
396 |
gtgaactacaacgaagagagaatccaacttatgtgttaagtactcatagtaatttgaaataaaaattgttcactgcaacgaagagataatgcaacttatg |
495 |
Q |
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| T |
28536228 |
gtgaactacaacgaagagagaatccaacttatgtgttaagtactcatagtgatttgaaataaaaattgttcactgcaaggaagagataatgcaacttatg |
28536129 |
T |
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| Q |
496 |
agttaagtactcggtatttttaaatagaaaatgttcgctgcaacgatgagaggccatagcctatgagttaaatattcagtgttgtgaatagaaattgt |
593 |
Q |
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| T |
28536128 |
agttaagtactctgtatttttaaatagaaaatgttcgctgcaacgatgagagg-catagcctatgagttaaatattcagtgttgtgaatagaaattgt |
28536032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 507
Target Start/End: Original strand, 25066924 - 25067005
Alignment:
| Q |
425 |
tatgtgttaagtactcatagtaatttgaaataaaaattgttcactgcaacgaagagataatgcaacttatgagttaagtactc |
507 |
Q |
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|||| ||||| ||||||||||| ||| ||||| ||| ||||| || ||| || |||||||| |||||||||||||| |||||| |
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| T |
25066924 |
tatgagttaaatactcatagta-tttaaaatacaaaatgttcgctccaaggaggagataattcaacttatgagttacgtactc |
25067005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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