View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_high_37 (Length: 211)
Name: NF1633_high_37
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 16917399 - 16917560
Alignment:
| Q |
19 |
ggtgcggataaaaggcgcaggttatataacggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccag |
118 |
Q |
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| T |
16917399 |
ggtgcggataaaaggcgcaggttatataacggcttagaacacattccctcgctggaaaatttgtctctgacagattttccttttcttagatctttgccag |
16917498 |
T |
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| Q |
119 |
actggttgggaaacacgcctactcttcaggaattagaaattagtaagtttcctatcttaacc |
180 |
Q |
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| T |
16917499 |
actggttgggaaacacgctatctcttcagaaattagaaattagtaagtttcctgtgttaacc |
16917560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 16912203 - 16912386
Alignment:
| Q |
9 |
gagtagcataggtgcggataaaaggcgcaggttatataacggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttaga |
108 |
Q |
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| T |
16912203 |
gagtatcatgggtggggatagaaggcgcgggatatataacggcttagaagacattcccttgctgcaaaatttgtctctgagagattttccttctcttaga |
16912302 |
T |
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| Q |
109 |
tctttgccagactggttgggaaacacgcctactcttcaggaattagaaattagtaagtttcctatcttaaccgagttaccagac |
192 |
Q |
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| T |
16912303 |
tctttgccagactggttgggagacacgctatctcttcaggaattagaaattagtaagtttcctaagttaacctcgttaccagac |
16912386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 13376036 - 13375982
Alignment:
| Q |
74 |
aaaatttgtctctgacagattttccttctcttagatctttgccagactggttggg |
128 |
Q |
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| T |
13376036 |
aaaatttgtctctaactaattttccttctctaacatccttgccagactggttggg |
13375982 |
T |
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