View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_high_5 (Length: 563)
Name: NF1633_high_5
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 156 - 557
Target Start/End: Original strand, 11370307 - 11370708
Alignment:
| Q |
156 |
tgatatgatctgagtttagccgttccgttattgatcataaatttaattgtctcgcagcgcgttcgagaagacgagtatgagaagtacattcactatgatc |
255 |
Q |
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| T |
11370307 |
tgatatgatctgagtttagccgttccgttattgatcataaatttaatcgtctcgcagcgcgttcgagaagacgagtatgagaagtacattcactatgatc |
11370406 |
T |
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| Q |
256 |
aaatatttcctggattttattttttggaaccttgcttttcattgtttagtcaatgccctgagcttctaagtaatgctttgaaagcaatggcatcaactat |
355 |
Q |
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| T |
11370407 |
aaatatttcctggattttattttttggaaccttgcttttcattgtttagtcaatgccctgagcttctaagtaatgctttgaaagcaatggcatcaactat |
11370506 |
T |
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| Q |
356 |
aaactatgatgcattgaagacaatgacatcaggcataggtttctacttggtatctgaagatgaccgtaaagagatgaggaattgtttgactagggtaaat |
455 |
Q |
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| T |
11370507 |
aacctatgatgcattgaagacaatgacatcaggcataggtttctacttggtatctgaagatgaccgtaaagagatgaggaattgtttgactagggcaaat |
11370606 |
T |
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| Q |
456 |
gtgattacatccgtaattgtgttgatgagcaaagacataagattaaaatctatgtctatcttcaaaaatgaaatcaattacatcatagatgatgtccatc |
555 |
Q |
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| T |
11370607 |
gtgattacatctgtaattgtgttgatgagcaaagacataagattaaaatctatgtctgtcttcaaaaatgaaatcaattacatcatagatgaagttcatc |
11370706 |
T |
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| Q |
556 |
tc |
557 |
Q |
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|| |
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| T |
11370707 |
tc |
11370708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 11370168 - 11370247
Alignment:
| Q |
16 |
acttatactcttgtttacatttagacatttgttttgaggtaggaaaagatataaaattattggttgacatgacatcttac |
95 |
Q |
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| T |
11370168 |
acttatactcttgtttacatttagacatttgttttgaggtaggaaaagatataaaattattggttgacatgacatcttac |
11370247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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