View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_high_7 (Length: 535)
Name: NF1633_high_7
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 157 - 518
Target Start/End: Complemental strand, 1237217 - 1236856
Alignment:
| Q |
157 |
caaaacaattaagttctacgaaagtttgaatcacaaagttaatatataatttgctgatccaatgaaacttttttaatttcagtatggaaaaaataaattt |
256 |
Q |
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| T |
1237217 |
caaaacaaataagttctacgaaagtttgaatcacaaagttaatatataatttgctgatccaatgaaacttttttaatttcagtatggaaaaattgaattt |
1237118 |
T |
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| Q |
257 |
gagaacaaaagcagggaaggcaaagatattaggtacactaacaggaattagtggggcaatggtattgacattcgttaaaggtgttgaaattaagatggga |
356 |
Q |
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| T |
1237117 |
gagaacaaaagcagggaaggcaaagatattaggtacactaacaggaattggtggggcaatggtattgacattcgttaaaggtgttgaaattaagatggga |
1237018 |
T |
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| Q |
357 |
tcattccatttaaatcttttacatcatcaaaatggtgttgtatcacacactatctccactgctaataccatttcgggttctctatgtgccttggctagta |
456 |
Q |
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| T |
1237017 |
tcattccatttaaatcttttacatcatcaaaatggtgttgtaacacacactatctccactgctaataccatttcgggttctctatgtgccttggctagta |
1236918 |
T |
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| Q |
457 |
gcatctcttatgcactttggcttattattcaggtttgatannnnnnnggttaataaattatt |
518 |
Q |
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| T |
1236917 |
gcatctcttatgcactttggcttattattcaggtttgatatttttttggttaataaattatt |
1236856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 1237361 - 1237246
Alignment:
| Q |
9 |
acatcatcagaagaattgtatctcagtctactttaagatatatactttaagaaaagtaaacatttgcttcttcnnnnnnngaaaagtaaccatttctaaa |
108 |
Q |
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| T |
1237361 |
acatcatcagaagaattgtatctcagtctactttaagatatatactttaagaaaagtaaacatttgcttcttcaaaaaaagaaaagtaaccatttctaaa |
1237262 |
T |
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| Q |
109 |
atttatcattggatca |
124 |
Q |
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| T |
1237261 |
atttatcattggatca |
1237246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 230 - 490
Target Start/End: Complemental strand, 917163 - 916891
Alignment:
| Q |
230 |
taatttcagtatggaaaaaataaatttgagaacaaaagcagggaaggcaaagatattaggtacactaacaggaattagtggggcaatggtattgacattc |
329 |
Q |
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| T |
917163 |
taatttcagtatggaaaaattaaatctaaggacaaaggctgggaaggcaaagatagtgggtacaataattggaattggtggagcaatgatattaactttc |
917064 |
T |
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| Q |
330 |
gttaaaggtgttgaaattaagatgggatcattccatttaaatcttttacatcatcaaaatggtgttgtatcaca------------cactatctccactg |
417 |
Q |
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| T |
917063 |
attaaaggtgttgaaatcaagatgggttcattccatttaaaccttttgcatcaccaaaacgatgtaggatcacattcacatgctactactatctccactg |
916964 |
T |
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| Q |
418 |
ctaataccatttcgggttctctatgtgccttggctagtagcatctcttatgcactttggcttattattcaggt |
490 |
Q |
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| T |
916963 |
gtaataccattttgggttctctgtatgccatggttagtgccatctcttatgcattgtggcttattattcaggt |
916891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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