View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_high_9 (Length: 496)
Name: NF1633_high_9
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 133 - 481
Target Start/End: Complemental strand, 27163540 - 27163190
Alignment:
| Q |
133 |
aatgcaataacacaatagcaaaagtataccttggtacttggtacactcgaaccaaattaaaaacaaaaccgtactccaaggaaactgcatccctcgactc |
232 |
Q |
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| T |
27163540 |
aatgcaataacacaatagcaaaagtataccatggtacttggtacactcaaaccaaattaaaaacaaaaccgtactccaaggaaactgcatccctcgaccc |
27163441 |
T |
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| Q |
233 |
taacttgtatgggaacat--tatttttctagatattggcttgttatgcaaacattcaaaaattggaattatgttcactcagacaaactaacccatactat |
330 |
Q |
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| T |
27163440 |
taacttgtatgggaacatattatttttctagatattggcttgttatgcaaacattcaaaaattggaattatgttcactcagacaaactaacccatactat |
27163341 |
T |
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| Q |
331 |
ggtgaatgaaaccacaataaaagagtgaaggcatagaataacttctctcttaagatacgtctagtaatttggaaaatgcagggaatcacaatggaccaac |
430 |
Q |
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| T |
27163340 |
ggtgaatgaaaccacaataaaagagtgaaggcatagaataacttctctcttaagatacgtctagtaatttggaaaatgcagggaatcacaatggaccaac |
27163241 |
T |
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| Q |
431 |
gaaaatgatcaccgtatgctgcaatttctacacagaaaatacgaggaaatt |
481 |
Q |
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| T |
27163240 |
gaaaatgatcaccgtatgctgcaatttctacacggaaaatacgaggaaatt |
27163190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 27163716 - 27163645
Alignment:
| Q |
13 |
taggcttgacaaaactctgaaattgtaagcacacaacaagaggactattgtagacaaggtagggttcacaac |
84 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27163716 |
taggattgacaaaactctgaaattgcaagcacacaacaagaggactattgtagacaaggtagggttgacaac |
27163645 |
T |
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