View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_14 (Length: 472)
Name: NF1633_low_14
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Complemental strand, 54689631 - 54689187
Alignment:
| Q |
10 |
gcagagagcttttgaggtttgtttctacagcaacttccattttctcttgtctgaaaaagaaagatgactatgagatcagaaaacatgtcagggttatagt |
109 |
Q |
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| T |
54689631 |
gcagagagcttttggggtttgtttctacagcaacttccattttctcttgtctgaaaaagaaagatgactatgagatcagaaaacatgtcagggttatagt |
54689532 |
T |
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| Q |
110 |
agttgttatcttctcaatataaagcaaataattacaggagacaagaatcgtattttatattttaaaattcaactggtagtgctaaggggcaatataatta |
209 |
Q |
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| T |
54689531 |
agttgttatcttctcaatataaagcaaataattacaggagacaagaatcgtattttatattttaaaattcaactggtagtgctaaggggcaatataatta |
54689432 |
T |
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| Q |
210 |
gaggggcatgcatgtgatgagagtaaacatggaaactggatcatgtgtctgcaggagaagaagcagttttatttataaataatttgttacgatccgtttt |
309 |
Q |
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| T |
54689431 |
gaggggcgtgcatgtgatgagagtaaacatggaaactggatcatgtgtctgcaggagaagaagcagttctatctataaataatttgttacaatccgtttt |
54689332 |
T |
|
| Q |
310 |
aatcaaatacacgtgtattgtatcttcatactcttgctagaataataaacatattgaacaaaacacctcaactcctagcctatgaggaagtcaatggtat |
409 |
Q |
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| T |
54689331 |
aatcaaatacacgtgtattgtatcttcatactcttgctagaataataaacatattgaacaaaacacctcaactcctagcctatgaggaagtcaatggtat |
54689232 |
T |
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| Q |
410 |
ccattgatgttaacatatgtttaaatgggtgatctgattcgtgtt |
454 |
Q |
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| T |
54689231 |
ccattgatgttaacatatgtttaaatgggtgatctgattcgtgtt |
54689187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 54701242 - 54701109
Alignment:
| Q |
231 |
agtaaacatggaaactggatcatgtgtctgcaggagaagaagcagttttatttataaataatttgttacgatccgttttaatcaaatacacgtgtattgt |
330 |
Q |
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|||||||||||||| |||||| |||||||| || || ||||||| || |||||||||||||||||||| |||| ||||||||||| |||||||||||||| |
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| T |
54701242 |
agtaaacatggaaagtggatcttgtgtctgtagtaggagaagcatttatatttataaataatttgttatgatctgttttaatcaagtacacgtgtattgt |
54701143 |
T |
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| Q |
331 |
atcttcatactcttgctagaataataaacatatt |
364 |
Q |
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| T |
54701142 |
atcttcatactcttgctacaataataaagatatt |
54701109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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